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PTBP3 polypyrimidine tract binding protein 3 [ Odocoileus virginianus (white-tailed deer) ]

Gene ID: 110142667, updated on 15-Mar-2024

Summary

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Gene symbol
PTBP3
Gene description
polypyrimidine tract binding protein 3
See related
EnsemblRapid:ENSOVIG00010008240
Gene type
protein coding
RefSeq status
MODEL
Organism
Odocoileus virginianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae; Odocoileus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
100 current Ovir.te_1.0 (GCF_002102435.1) Unplaced Scaffold NW_018335367.1 (204898..283976, complement)

NW_018335367.1Genomic Context describing neighboring genes Neighboring gene sushi domain-containing protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018335367 Unplaced Scaffold Reference Ovir.te_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein phosphatase 2A binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypyrimidine tract-binding protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odocoileus virginianus texanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ovir.te_1.0 Primary Assembly

Genomic

  1. NW_018335367.1 Reference Ovir.te_1.0 Primary Assembly

    Range
    204898..283976 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020901962.1 → XP_020757621.1  polypyrimidine tract-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A6J0Y8U0
    Related
    ENSOVIP00010011521.1, ENSOVIT00010013044.1
    Conserved Domains (1) summary
    TIGR01649
    Location:97 → 594
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  2. XM_020901966.1 → XP_020757625.1  polypyrimidine tract-binding protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A6J0Y7P5
    Related
    ENSOVIP00010011461.1, ENSOVIT00010012974.1
    Conserved Domains (1) summary
    TIGR01649
    Location:60 → 557
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  3. XM_020901968.1 → XP_020757627.1  polypyrimidine tract-binding protein 3 isoform X7

    UniProtKB/TrEMBL
    A0A6J0Y7N4
    Related
    ENSOVIP00010011611.1, ENSOVIT00010013140.1
    Conserved Domains (1) summary
    TIGR01649
    Location:29 → 526
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  4. XM_020901963.1 → XP_020757622.1  polypyrimidine tract-binding protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A6J0Y8E5
    Conserved Domains (1) summary
    TIGR01649
    Location:94 → 591
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  5. XM_020901964.1 → XP_020757623.1  polypyrimidine tract-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A6J0Y7M9
    Conserved Domains (1) summary
    TIGR01649
    Location:83 → 580
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  6. XM_020901965.1 → XP_020757624.1  polypyrimidine tract-binding protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A6J0Y7S9
    Conserved Domains (1) summary
    TIGR01649
    Location:82 → 579
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  7. XM_020901969.1 → XP_020757628.1  polypyrimidine tract-binding protein 3 isoform X7

    UniProtKB/TrEMBL
    A0A6J0Y7N4
    Conserved Domains (1) summary
    TIGR01649
    Location:29 → 526
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  8. XM_020901972.1 → XP_020757631.1  polypyrimidine tract-binding protein 3 isoform X7

    UniProtKB/TrEMBL
    A0A6J0Y7N4
    Conserved Domains (1) summary
    TIGR01649
    Location:29 → 526
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  9. XM_020901970.1 → XP_020757629.1  polypyrimidine tract-binding protein 3 isoform X7

    UniProtKB/TrEMBL
    A0A6J0Y7N4
    Conserved Domains (1) summary
    TIGR01649
    Location:29 → 526
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  10. XM_020901973.1 → XP_020757632.1  polypyrimidine tract-binding protein 3 isoform X7

    UniProtKB/TrEMBL
    A0A6J0Y7N4
    Conserved Domains (1) summary
    TIGR01649
    Location:29 → 526
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  11. XM_020901971.1 → XP_020757630.1  polypyrimidine tract-binding protein 3 isoform X7

    UniProtKB/TrEMBL
    A0A6J0Y7N4
    Conserved Domains (1) summary
    TIGR01649
    Location:29 → 526
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  12. XM_020901967.1 → XP_020757626.1  polypyrimidine tract-binding protein 3 isoform X6

    UniProtKB/TrEMBL
    A0A6J0Y8U4
    Conserved Domains (1) summary
    TIGR01649
    Location:45 → 542
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  13. XM_020901975.1 → XP_020757634.1  polypyrimidine tract-binding protein 3 isoform X8

    UniProtKB/TrEMBL
    A0A6J0Y7U0
    Conserved Domains (1) summary
    pfam04177
    Location:41 → 356
    TAP42; TAP42-like family

  14. XM_020901976.1 → XP_020757635.1  polypyrimidine tract-binding protein 3 isoform X9

    UniProtKB/TrEMBL
    A0A6J0Y7Q2
    Conserved Domains (1) summary
    pfam04177
    Location:36 → 351
    TAP42; TAP42-like family

  15. XM_020901980.1 → XP_020757639.1  polypyrimidine tract-binding protein 3 isoform X12

    UniProtKB/TrEMBL
    A0A6J0Y7Q7
    Related
    ENSOVIP00010011630.1, ENSOVIT00010013161.1
    Conserved Domains (1) summary
    pfam04177
    Location:13 → 328
    TAP42; TAP42-like family

  16. XM_020901974.1 → XP_020757633.1  polypyrimidine tract-binding protein 3 isoform X8

    UniProtKB/TrEMBL
    A0A6J0Y7U0
    Conserved Domains (1) summary
    pfam04177
    Location:41 → 356
    TAP42; TAP42-like family

  17. XM_020901981.1 → XP_020757640.1  polypyrimidine tract-binding protein 3 isoform X12

    UniProtKB/TrEMBL
    A0A6J0Y7Q7
    Conserved Domains (1) summary
    pfam04177
    Location:13 → 328
    TAP42; TAP42-like family

  18. XM_020901978.1 → XP_020757637.1  polypyrimidine tract-binding protein 3 isoform X10

    UniProtKB/TrEMBL
    A0A6J0Y8F9
    Conserved Domains (1) summary
    pfam04177
    Location:24 → 339
    TAP42; TAP42-like family

  19. XM_020901979.1 → XP_020757638.1  polypyrimidine tract-binding protein 3 isoform X11

    UniProtKB/TrEMBL
    A0A6J0Y7P1
    Conserved Domains (1) summary
    pfam04177
    Location:19 → 334
    TAP42; TAP42-like family
Nucleotide Protein
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