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SENP6 SUMO specific peptidase 6 [ Odocoileus virginianus (white-tailed deer) ]

Gene ID: 110142195, updated on 15-Mar-2024

Summary

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Gene symbol
SENP6
Gene description
SUMO specific peptidase 6
See related
EnsemblRapid:ENSOVIG00010002441
Gene type
protein coding
RefSeq status
MODEL
Organism
Odocoileus virginianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae; Odocoileus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current Ovir.te_1.0 (GCF_002102435.1) Unplaced Scaffold NW_018327817.1 (691528..821204)

NW_018327817.1Genomic Context describing neighboring genes Neighboring gene filamin A interacting protein 1 Neighboring gene uncharacterized LOC110142185 Neighboring gene 60S ribosomal protein L17 pseudogene Neighboring gene protein BEX2-like Neighboring gene myosin VI

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018327817 Unplaced Scaffold Reference Ovir.te_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SUMO-specific endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein desumoylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of kinetochore assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of spindle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sentrin-specific protease 6
Names
SUMO1/sentrin specific peptidase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odocoileus virginianus texanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ovir.te_1.0 Primary Assembly

Genomic

  1. NW_018327817.1 Reference Ovir.te_1.0 Primary Assembly

    Range
    691528..821204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020901276.1 → XP_020756935.1  sentrin-specific protease 6 isoform X1

    UniProtKB/TrEMBL
    A0A6J0Y5W5
    Related
    ENSOVIP00010003408.1, ENSOVIT00010003839.1
    Conserved Domains (2) summary
    COG5160
    Location:693 → 805
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    cl23802
    Location:1005 → 1081
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

  2. XM_020901287.1 → XP_020756946.1  sentrin-specific protease 6 isoform X2

    UniProtKB/TrEMBL
    A0A6J0Y6M9
    Conserved Domains (2) summary
    COG5160
    Location:692 → 804
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    cl23802
    Location:1004 → 1080
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

  3. XM_020901292.1 → XP_020756951.1  sentrin-specific protease 6 isoform X3

    UniProtKB/TrEMBL
    A0A6J0Y6N7
    Related
    ENSOVIP00010003416.1, ENSOVIT00010003849.1
    Conserved Domains (2) summary
    COG5160
    Location:686 → 798
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    cl23802
    Location:998 → 1074
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

  4. XM_020901314.1 → XP_020756973.1  sentrin-specific protease 6 isoform X6

    UniProtKB/TrEMBL
    A0A6J0Y5X5
    Conserved Domains (1) summary
    COG5160
    Location:686 → 715
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

  5. XM_020901297.1 → XP_020756956.1  sentrin-specific protease 6 isoform X4

    UniProtKB/TrEMBL
    A0A6J0Y6P5
    Conserved Domains (2) summary
    COG5160
    Location:647 → 759
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    cl23802
    Location:959 → 1035
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

  6. XM_020901306.1 → XP_020756965.1  sentrin-specific protease 6 isoform X5

    UniProtKB/TrEMBL
    A0A6J0Y5Z7
    Conserved Domains (2) summary
    COG5160
    Location:511 → 623
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    cl23802
    Location:823 → 899
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

  7. XM_020901300.1 → XP_020756959.1  sentrin-specific protease 6 isoform X5

    UniProtKB/TrEMBL
    A0A6J0Y5Z7
    Conserved Domains (2) summary
    COG5160
    Location:511 → 623
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    cl23802
    Location:823 → 899
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain
Nucleotide Protein
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