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COL12A1 collagen type XII alpha 1 chain [ Odocoileus virginianus (white-tailed deer) ]

Gene ID: 110142097, updated on 15-Mar-2024

Summary

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Gene symbol
COL12A1
Gene description
collagen type XII alpha 1 chain
See related
EnsemblRapid:ENSOVIG00010001163
Gene type
protein coding
RefSeq status
MODEL
Organism
Odocoileus virginianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae; Odocoileus
Orthologs
human mouse all
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Genomic context

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See COL12A1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
66
Annotation release Status Assembly Chr Location
100 current Ovir.te_1.0 (GCF_002102435.1) Unplaced Scaffold NW_018327817.1 (144474..260807, complement)

NW_018327817.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S6 pseudogene Neighboring gene uncharacterized LOC110142109 Neighboring gene uncharacterized LOC110142113 Neighboring gene cytochrome c oxidase subunit 7A2, mitochondrial Neighboring gene transmembrane protein 30A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018327817 Unplaced Scaffold Reference Ovir.te_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(XII) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odocoileus virginianus texanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ovir.te_1.0 Primary Assembly

Genomic

  1. NW_018327817.1 Reference Ovir.te_1.0 Primary Assembly

    Range
    144474..260807 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020901132.1 → XP_020756791.1  collagen alpha-1(XII) chain

    UniProtKB/TrEMBL
    A0A6J0Y650
    Related
    ENSOVIP00010003038.1, ENSOVIT00010003432.1
    Conserved Domains (6) summary
    pfam01391
    Location:2871 → 2899
    Collagen; Collagen triple helix repeat (20 copies)
    smart00060
    Location:1474 → 1548
    FN3; Fibronectin type 3 domain
    smart00210
    Location:2522 → 2714
    TSPN; Thrombospondin N-terminal -like domains
    cd00063
    Location:2120 → 2199
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd01482
    Location:1198 → 1361
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:1758 → 1836
    fn3; Fibronectin type III domain

RNA

  1. XR_002315229.1 RNA Sequence

    Related
    ENSOVIT00010003517.1
Nucleotide Protein
Heading Accession and Version

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