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ATP2B1 ATPase plasma membrane Ca2+ transporting 1 [ Odocoileus virginianus (white-tailed deer) ]

Gene ID: 110130445, updated on 15-Mar-2024

Summary

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Gene symbol
ATP2B1
Gene description
ATPase plasma membrane Ca2+ transporting 1
See related
EnsemblRapid:ENSOVIG00010018430
Gene type
protein coding
RefSeq status
MODEL
Organism
Odocoileus virginianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae; Odocoileus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current Ovir.te_1.0 (GCF_002102435.1) Unplaced Scaffold NW_018342231.1 (429880..551891)

NW_018342231.1Genomic Context describing neighboring genes Neighboring gene potassium calcium-activated channel subfamily M regulatory beta subunit 1 Neighboring gene 40S ribosomal protein S26-like Neighboring gene uncharacterized LOC110130448 Neighboring gene POC1 centriolar protein B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018342231 Unplaced Scaffold Reference Ovir.te_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type calcium transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables PDZ domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plasma membrane calcium-transporting ATPase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odocoileus virginianus texanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ovir.te_1.0 Primary Assembly

Genomic

  1. NW_018342231.1 Reference Ovir.te_1.0 Primary Assembly

    Range
    429880..551891
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020882464.1 → XP_020738123.1  plasma membrane calcium-transporting ATPase 1 isoform X3

    UniProtKB/TrEMBL
    A0A6J0WKC1
    Conserved Domains (2) summary
    TIGR01517
    Location:15 → 1064
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam12424
    Location:1103 → 1142
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

  2. XM_020882462.1 → XP_020738121.1  plasma membrane calcium-transporting ATPase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6J0WMR8
    Related
    ENSOVIP00010026280.1, ENSOVIT00010029685.1
    Conserved Domains (2) summary
    TIGR01517
    Location:15 → 1064
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam12424
    Location:1103 → 1178
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

  3. XM_020882463.1 → XP_020738122.1  plasma membrane calcium-transporting ATPase 1 isoform X2

    UniProtKB/TrEMBL
    A0A6J0WJX5
    Related
    ENSOVIP00010026543.1, ENSOVIT00010029977.1
    Conserved Domains (2) summary
    TIGR01517
    Location:15 → 1064
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam12424
    Location:1103 → 1149
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
Nucleotide Protein
Heading Accession and Version

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