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FANCM FA complementation group M [ Odocoileus virginianus (white-tailed deer) ]

Gene ID: 110129819, updated on 15-Mar-2024

Summary

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Gene symbol
FANCM
Gene description
FA complementation group M
See related
EnsemblRapid:ENSOVIG00010010384
Gene type
protein coding
RefSeq status
MODEL
Organism
Odocoileus virginianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae; Odocoileus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
31
Annotation release Status Assembly Chr Location
100 current Ovir.te_1.0 (GCF_002102435.1) Unplaced Scaffold NW_018341731.1 (976325..1161640, complement)

NW_018341731.1Genomic Context describing neighboring genes Neighboring gene adenosine deaminase like Neighboring gene leucine carboxyl methyltransferase 2 Neighboring gene transglutaminase 7 Neighboring gene transglutaminase 5 Neighboring gene cyclic AMP-dependent transcription factor ATF-4-like Neighboring gene MIS18 binding protein 1 Neighboring gene FKBP prolyl isomerase 3 Neighboring gene pre-mRNA processing factor 39

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018341731 Unplaced Scaffold Reference Ovir.te_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5' DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables four-way junction DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables four-way junction helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via synthesis-dependent strand annealing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in replication fork reversal IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Fanconi anemia group M protein
Names
Fanconi anemia complementation group M

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odocoileus virginianus texanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ovir.te_1.0 Primary Assembly

Genomic

  1. NW_018341731.1 Reference Ovir.te_1.0 Primary Assembly

    Range
    976325..1161640 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020881442.1 → XP_020737101.1  Fanconi anemia group M protein isoform X1

    UniProtKB/TrEMBL
    A0A6J0WJQ8
    Related
    ENSOVIP00010014931.1, ENSOVIT00010016875.1
    Conserved Domains (4) summary
    pfam09444
    Location:1513 → 1593
    MRC1; MRC1-like domain
    pfam16783
    Location:678 → 792
    FANCM-MHF_bd; FANCM to MHF binding domain
    cl17041
    Location:86 → 620
    helicase_insert_domain
    cl27383
    Location:1813 → 2027
    ERCC4; ERCC4 domain

  2. XM_020881443.1 → XP_020737102.1  Fanconi anemia group M protein isoform X2

    UniProtKB/TrEMBL
    A0A6J0WH84
    Related
    ENSOVIP00010015123.1, ENSOVIT00010017093.1
    Conserved Domains (4) summary
    pfam09444
    Location:1513 → 1593
    MRC1; MRC1-like domain
    pfam16783
    Location:678 → 792
    FANCM-MHF_bd; FANCM to MHF binding domain
    cl17041
    Location:86 → 620
    helicase_insert_domain
    cl27383
    Location:1813 → 2027
    ERCC4; ERCC4 domain

  3. XM_020881444.1 → XP_020737103.1  Fanconi anemia group M protein isoform X3

    UniProtKB/TrEMBL
    A0A6J0WH86
    Conserved Domains (3) summary
    pfam09444
    Location:1513 → 1593
    MRC1; MRC1-like domain
    pfam16783
    Location:678 → 792
    FANCM-MHF_bd; FANCM to MHF binding domain
    cl17041
    Location:86 → 620
    helicase_insert_domain

RNA

  1. XR_002311620.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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