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TP53 tumor protein p53 [ Odocoileus virginianus (white-tailed deer) ]

Gene ID: 110121763, updated on 15-Mar-2024

Summary

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Gene symbol
TP53
Gene description
tumor protein p53
See related
EnsemblRapid:ENSOVIG00010022878
Gene type
protein coding
RefSeq status
MODEL
Organism
Odocoileus virginianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae; Odocoileus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Ovir.te_1.0 (GCF_002102435.1) Unplaced Scaffold NW_018337565.1 (995426..1008332)

NW_018337565.1Genomic Context describing neighboring genes Neighboring gene ephrin B3 Neighboring gene WD repeat containing antisense to TP53 Neighboring gene ATPase Na+/K+ transporting subunit beta 2 Neighboring gene 28S ribosomal protein S16, mitochondrial pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018337565 Unplaced Scaffold Reference Ovir.te_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein tetramerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellular tumor antigen p53

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odocoileus virginianus texanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ovir.te_1.0 Primary Assembly

Genomic

  1. NW_018337565.1 Reference Ovir.te_1.0 Primary Assembly

    Range
    995426..1008332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020869030.1 → XP_020724689.1  cellular tumor antigen p53 isoform X2

    UniProtKB/TrEMBL
    A0A6J0VME6
    Conserved Domains (3) summary
    pfam00870
    Location:91 → 285
    P53; P53 DNA-binding domain
    pfam07710
    Location:315 → 354
    P53_tetramer; P53 tetramerisation motif
    pfam08563
    Location:5 → 28
    P53_TAD; P53 transactivation motif

  2. XM_020869029.1 → XP_020724688.1  cellular tumor antigen p53 isoform X2

    UniProtKB/TrEMBL
    A0A6J0VME6
    Conserved Domains (3) summary
    pfam00870
    Location:91 → 285
    P53; P53 DNA-binding domain
    pfam07710
    Location:315 → 354
    P53_tetramer; P53 tetramerisation motif
    pfam08563
    Location:5 → 28
    P53_TAD; P53 transactivation motif

  3. XM_020869028.1 → XP_020724687.1  cellular tumor antigen p53 isoform X2

    UniProtKB/TrEMBL
    A0A6J0VME6
    Related
    ENSOVIP00010032315.1, ENSOVIT00010036584.1
    Conserved Domains (3) summary
    pfam00870
    Location:91 → 285
    P53; P53 DNA-binding domain
    pfam07710
    Location:315 → 354
    P53_tetramer; P53 tetramerisation motif
    pfam08563
    Location:5 → 28
    P53_TAD; P53 transactivation motif

  4. XM_020869032.1 → XP_020724691.1  cellular tumor antigen p53 isoform X4

    UniProtKB/TrEMBL
    A0A6J0VGP1
    Related
    ENSOVIP00010032297.1, ENSOVIT00010036565.1
    Conserved Domains (3) summary
    pfam00870
    Location:91 → 285
    P53; P53 DNA-binding domain
    pfam07710
    Location:315 → 354
    P53_tetramer; P53 tetramerisation motif
    pfam08563
    Location:5 → 28
    P53_TAD; P53 transactivation motif

  5. XM_020869027.1 → XP_020724686.1  cellular tumor antigen p53 isoform X1

    UniProtKB/TrEMBL
    A0A6J0VGN3
    Conserved Domains (3) summary
    pfam00870
    Location:102 → 296
    P53; P53 DNA-binding domain
    pfam07710
    Location:326 → 365
    P53_tetramer; P53 tetramerisation motif
    pfam08563
    Location:16 → 39
    P53_TAD; P53 transactivation motif

  6. XM_020869031.1 → XP_020724690.1  cellular tumor antigen p53 isoform X3

    UniProtKB/TrEMBL
    A0A6J0VKC1
    Conserved Domains (3) summary
    pfam00870
    Location:102 → 296
    P53; P53 DNA-binding domain
    pfam07710
    Location:326 → 365
    P53_tetramer; P53 tetramerisation motif
    pfam08563
    Location:16 → 39
    P53_TAD; P53 transactivation motif
Nucleotide Protein
Heading Accession and Version

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