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COPA COPI coat complex subunit alpha [ Pogona vitticeps (central bearded dragon) ]

Gene ID: 110088115, updated on 15-Mar-2024

Summary

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Gene symbol
COPA
Gene description
COPI coat complex subunit alpha
See related
Ensembl:ENSPVIG00000019344
Gene type
protein coding
RefSeq status
MODEL
Organism
Pogona vitticeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Acrodonta; Agamidae; Amphibolurinae; Pogona
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
100 current pvi1.1 (GCF_900067755.1) Unplaced Scaffold NW_018151282.1 (616740..642183, complement)

NW_018151282.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 179B Neighboring gene uncharacterized LOC110088108 Neighboring gene nicastrin Neighboring gene nescient helix-loop-helix 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018151282.1 Unplaced Scaffold Reference pvi1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPI vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coatomer subunit alpha
Names
coatomer protein complex subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pogona vitticeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pvi1.1

Genomic

  1. NW_018151282.1 Reference pvi1.1

    Range
    616740..642183 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020810231.1 → XP_020665890.1  coatomer subunit alpha

    UniProtKB/TrEMBL
    A0A6J0V2X4
    Related
    ENSPVIP00000027341.1, ENSPVIT00000033622.1
    Conserved Domains (4) summary
    cd00200
    Location:9 → 318
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:15 → 49
    7WD40; WD40 repeat [structural motif]
    pfam04053
    Location:338 → 767
    Coatomer_WDAD; Coatomer WD associated region
    pfam06957
    Location:816 → 1217
    COPI_C; Coatomer (COPI) alpha subunit C-terminus
Nucleotide Protein
Heading Accession and Version

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