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ATG2B autophagy related 2B [ Pogona vitticeps (central bearded dragon) ]

Gene ID: 110081341, updated on 15-Mar-2024

Summary

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Gene symbol
ATG2B
Gene description
autophagy related 2B
See related
Ensembl:ENSPVIG00000018463
Gene type
protein coding
RefSeq status
MODEL
Organism
Pogona vitticeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Acrodonta; Agamidae; Amphibolurinae; Pogona
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
43
Annotation release Status Assembly Chr Location
100 current pvi1.1 (GCF_900067755.1) Unplaced Scaffold NW_018150927.1 (328332..388557, complement)

NW_018150927.1Genomic Context describing neighboring genes Neighboring gene chromosome unknown C14orf132 homolog Neighboring gene bradykinin receptor B2 Neighboring gene GSK3B interacting protein Neighboring gene adenylate kinase 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018150927.1 Unplaced Scaffold Reference pvi1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-3-phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in piecemeal microautophagy of the nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in reticulophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
autophagy-related protein 2 homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pogona vitticeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pvi1.1

Genomic

  1. NW_018150927.1 Reference pvi1.1

    Range
    328332..388557 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020797949.1 → XP_020653608.1  autophagy-related protein 2 homolog B isoform X3

    UniProtKB/TrEMBL
    A0A6J0U156
    Conserved Domains (3) summary
    pfam09333
    Location:1977 → 2071
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:11 → 106
    Chorein_N; N-terminal region of Chorein or VPS13
    cl25572
    Location:17 → 232
    VPS13; Vacuolar sorting-associated protein 13, N-terminal

  2. XM_020797948.1 → XP_020653607.1  autophagy-related protein 2 homolog B isoform X2

    UniProtKB/TrEMBL
    A0A6J0TZ11
    Conserved Domains (3) summary
    pfam09333
    Location:1977 → 2071
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:11 → 106
    Chorein_N; N-terminal region of Chorein or VPS13
    cl25572
    Location:17 → 232
    VPS13; Vacuolar sorting-associated protein 13, N-terminal

  3. XM_020797947.1 → XP_020653606.1  autophagy-related protein 2 homolog B isoform X1

    UniProtKB/TrEMBL
    A0A6J0TYM4
    Related
    ENSPVIP00000024932.1, ENSPVIT00000030772.1
    Conserved Domains (3) summary
    pfam09333
    Location:1978 → 2072
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:11 → 106
    Chorein_N; N-terminal region of Chorein or VPS13
    cl25572
    Location:17 → 232
    VPS13; Vacuolar sorting-associated protein 13, N-terminal

RNA

  1. XR_002300944.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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