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SATB2 SATB homeobox 2 [ Pogona vitticeps (central bearded dragon) ]

Gene ID: 110079898, updated on 15-Mar-2024

Summary

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Gene symbol
SATB2
Gene description
SATB homeobox 2
See related
Ensembl:ENSPVIG00000004169
Gene type
protein coding
RefSeq status
MODEL
Organism
Pogona vitticeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Acrodonta; Agamidae; Amphibolurinae; Pogona
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current pvi1.1 (GCF_900067755.1) Unplaced Scaffold NW_018150878.1 (418456..612419)

NW_018150878.1Genomic Context describing neighboring genes Neighboring gene glutamate formimidoyltransferase-like Neighboring gene chromosome unknown C2orf69 homolog Neighboring gene SUN domain-containing protein 3-like Neighboring gene uncharacterized LOC110079885

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018150878.1 Unplaced Scaffold Reference pvi1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein SATB2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pogona vitticeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pvi1.1

Genomic

  1. NW_018150878.1 Reference pvi1.1

    Range
    418456..612419
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020795339.1 → XP_020650998.1  DNA-binding protein SATB2 isoform X1

    UniProtKB/TrEMBL
    A0A6J0TTV4
    Related
    ENSPVIP00000005124.1, ENSPVIT00000006552.1
    Conserved Domains (4) summary
    smart00389
    Location:612 → 669
    HOX; Homeodomain
    cd11585
    Location:60 → 155
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:477 → 555
    CUT; CUT domain
    pfam16557
    Location:162 → 232
    CUTL; CUT1-like DNA-binding domain of SATB

  2. XM_020795340.1 → XP_020650999.1  DNA-binding protein SATB2 isoform X2

    UniProtKB/TrEMBL
    A0A6J0TY85
    Conserved Domains (4) summary
    smart00389
    Location:541 → 598
    HOX; Homeodomain
    cd11585
    Location:60 → 155
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:406 → 484
    CUT; CUT domain
    pfam16557
    Location:162 → 232
    CUTL; CUT1-like DNA-binding domain of SATB

  3. XM_020795344.1 → XP_020651003.1  DNA-binding protein SATB2 isoform X4

    UniProtKB/TrEMBL
    A0A6J0TTW1
    Related
    ENSPVIP00000005125.1, ENSPVIT00000006553.1
    Conserved Domains (3) summary
    smart00389
    Location:471 → 528
    HOX; Homeodomain
    pfam02376
    Location:336 → 414
    CUT; CUT domain
    pfam16557
    Location:21 → 91
    CUTL; CUT1-like DNA-binding domain of SATB

  4. XM_020795341.1 → XP_020651000.1  DNA-binding protein SATB2 isoform X3

    UniProtKB/TrEMBL
    A0A6J0TVG9
    Conserved Domains (4) summary
    smart00389
    Location:503 → 560
    HOX; Homeodomain
    pfam02376
    Location:368 → 446
    CUT; CUT domain
    pfam16557
    Location:53 → 123
    CUTL; CUT1-like DNA-binding domain of SATB
    cl16936
    Location:7 → 46
    SATB1_N; N-terminal domain of SATB1 and similar proteins

  5. XM_020795342.1 → XP_020651001.1  DNA-binding protein SATB2 isoform X4

    UniProtKB/TrEMBL
    A0A6J0TTW1
    Conserved Domains (3) summary
    smart00389
    Location:471 → 528
    HOX; Homeodomain
    pfam02376
    Location:336 → 414
    CUT; CUT domain
    pfam16557
    Location:21 → 91
    CUTL; CUT1-like DNA-binding domain of SATB

  6. XM_020795343.1 → XP_020651002.1  DNA-binding protein SATB2 isoform X4

    UniProtKB/TrEMBL
    A0A6J0TTW1
    Conserved Domains (3) summary
    smart00389
    Location:471 → 528
    HOX; Homeodomain
    pfam02376
    Location:336 → 414
    CUT; CUT domain
    pfam16557
    Location:21 → 91
    CUTL; CUT1-like DNA-binding domain of SATB
Nucleotide Protein
Heading Accession and Version

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