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TRIM36 tripartite motif containing 36 [ Pogona vitticeps (central bearded dragon) ]

Gene ID: 110072042, updated on 15-Mar-2024

Summary

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Gene symbol
TRIM36
Gene description
tripartite motif containing 36
See related
Ensembl:ENSPVIG00000010967
Gene type
protein coding
RefSeq status
MODEL
Organism
Pogona vitticeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Acrodonta; Agamidae; Amphibolurinae; Pogona
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current pvi1.1 (GCF_900067755.1) Unplaced Scaffold NW_018150719.1 (3799639..3868854, complement)

NW_018150719.1Genomic Context describing neighboring genes Neighboring gene potassium calcium-activated channel subfamily N member 2 Neighboring gene uncharacterized LOC110072061 Neighboring gene protein geranylgeranyltransferase type I subunit beta Neighboring gene coiled-coil domain containing 112

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018150719.1 Unplaced Scaffold Reference pvi1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM36

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pogona vitticeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pvi1.1

Genomic

  1. NW_018150719.1 Reference pvi1.1

    Range
    3799639..3868854 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020780031.1 → XP_020635690.1  E3 ubiquitin-protein ligase TRIM36 isoform X3

    UniProtKB/TrEMBL
    A0A6J0SL13
    Related
    ENSPVIP00000014191.1, ENSPVIT00000017778.1
    Conserved Domains (5) summary
    cd00021
    Location:211 → 249
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd00063
    Location:431 → 509
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12894
    Location:517 → 723
    SPRY_PRY_TRIM36; PRY/SPRY domain in tripartite motif-containing protein 36 (TRIM36)
    cd16756
    Location:28 → 125
    RING-HC_TRIM36; RING finger, HC subclass, found in tripartite motif-containing protein 36 (TRIM36) and similar proteins
    cl25407
    Location:256 → 380
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

  2. XM_020780029.1 → XP_020635688.1  E3 ubiquitin-protein ligase TRIM36 isoform X1

    UniProtKB/TrEMBL
    A0A6J0SLH8
    Related
    ENSPVIP00000014190.1, ENSPVIT00000017777.1
    Conserved Domains (5) summary
    cd00021
    Location:211 → 249
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd00063
    Location:431 → 509
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12894
    Location:517 → 754
    SPRY_PRY_TRIM36; PRY/SPRY domain in tripartite motif-containing protein 36 (TRIM36)
    cd16756
    Location:28 → 125
    RING-HC_TRIM36; RING finger, HC subclass, found in tripartite motif-containing protein 36 (TRIM36) and similar proteins
    cl25407
    Location:256 → 380
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

  3. XM_020780030.1 → XP_020635689.1  E3 ubiquitin-protein ligase TRIM36 isoform X2

    UniProtKB/TrEMBL
    A0A6J0SPF3
    Related
    ENSPVIP00000014192.1, ENSPVIT00000017779.1
    Conserved Domains (5) summary
    cd00021
    Location:199 → 237
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd00063
    Location:419 → 497
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12894
    Location:505 → 742
    SPRY_PRY_TRIM36; PRY/SPRY domain in tripartite motif-containing protein 36 (TRIM36)
    cd16756
    Location:16 → 113
    RING-HC_TRIM36; RING finger, HC subclass, found in tripartite motif-containing protein 36 (TRIM36) and similar proteins
    cl25407
    Location:244 → 368
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)
Nucleotide Protein
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