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Dek DEK oncogene (DNA binding) [ Mus musculus (house mouse) ]

Gene ID: 110052, updated on 26-Jun-2015
Official Symbol
Dekprovided by MGI
Official Full Name
DEK oncogene (DNA binding)provided by MGI
Primary source
MGI:MGI:1926209
See related
Ensembl:ENSMUSG00000021377; Vega:OTTMUSG00000024779
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D13H6S231E; 1810019E15Rik
Orthologs
Location:
13 24.5 cM; 13 B1
Exon count:
12
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 13 NC_000079.6 (47084767..47106221, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (47180136..47201589, complement)

Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene NHL repeat containing 1 Neighboring gene NLR family, pyrin domain containing 4B pseudogene Neighboring gene thiopurine methyltransferase Neighboring gene lysine (K)-specific demethylase 1B Neighboring gene predicted gene, 40935 Neighboring gene ring finger protein 144B Neighboring gene RIKEN cDNA A930002C04 gene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
histone binding ISO
Inferred from Sequence Orthology
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
cell quiescence IMP
Inferred from Mutant Phenotype
more info
PubMed 
chromatin modification IEA
Inferred from Electronic Annotation
more info
 
regulation of double-strand break repair ISO
Inferred from Sequence Orthology
more info
 
regulation of double-strand break repair via nonhomologous end joining IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
contractile fiber IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
protein DEK
Names
protein DEK

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025900.2NP_080176.2  protein DEK

    See identical proteins and their annotated locations for NP_080176.2

    Status: VALIDATED

    Source sequence(s)
    AK033451, AK141790, AV449751, BU920290, BY429959
    Consensus CDS
    CCDS26490.1
    UniProtKB/TrEMBL
    Q3UR53
    UniProtKB/Swiss-Prot
    Q7TNV0
    Related
    ENSMUSP00000021807, OTTMUSP00000029851, ENSMUST00000021807, OTTMUST00000061016
    Conserved Domains (2) summary
    smart00513
    Location:153187
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    pfam08766
    Location:326380
    DEK_C; DEK C terminal domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000079.6 Reference GRCm38.p3 C57BL/6J

    Range
    47084767..47106221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_382230.1 RNA Sequence

Alternate Mm_Celera

Genomic

  1. AC_000035.1 Alternate Mm_Celera

    Range
    48169343..48190333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)