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sox17 SRY-box transcription factor 17 [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109999665, updated on 14-Mar-2024

Summary

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Gene symbol
sox17
Gene description
SRY-box transcription factor 17
See related
Ensembl:ENSLBEG00000023367
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114998.1 (68569..70627, complement)

NW_018114998.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109999663 Neighboring gene uncharacterized LOC114921399 Neighboring gene SRY-box transcription factor 32 Neighboring gene mitochondrial ribosomal protein L15

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018114998 Unplaced Scaffold Reference BallGen_V1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vasculogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SOX-17
Names
SRY-box 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Labrus bergylta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BallGen_V1

Genomic

  1. NW_018114998.1 Reference BallGen_V1

    Range
    68569..70627 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020654761.2 → XP_020510417.1  transcription factor SOX-17

    UniProtKB/TrEMBL
    A0A3Q3NA43
    Related
    ENSLBEP00000030920.1, ENSLBET00000032337.1
    Conserved Domains (2) summary
    cd01388
    Location:66 → 137
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam12067
    Location:189 → 237
    Sox17_18_mid; Sox 17/18 central domain
Nucleotide Protein
Heading Accession and Version

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