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usp30 ubiquitin specific peptidase 30 [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109990992, updated on 21-Dec-2023

Summary

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Gene symbol
usp30
Gene description
ubiquitin specific peptidase 30
See related
Ensembl:ENSLBEG00000000859
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
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Genomic context

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See usp30 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114609.1 (525101..537703, complement)

NW_018114609.1Genomic Context describing neighboring genes Neighboring gene uracil DNA glycosylase a Neighboring gene alkB homolog 2, alpha-ketoglutarate dependent dioxygenase Neighboring gene uracil-DNA glycosylase-like Neighboring gene SV2 related protein a Neighboring gene D-amino acid oxidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018114609 Unplaced Scaffold Reference BallGen_V1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 30

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Labrus bergylta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BallGen_V1

Genomic

  1. NW_018114609.1 Reference BallGen_V1

    Range
    525101..537703 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020643283.2 → XP_020498939.1  ubiquitin carboxyl-terminal hydrolase 30 isoform X1

    UniProtKB/TrEMBL
    A0A3Q3E2H4, A0A3Q3E2K6
    Related
    ENSLBEP00000001138.1, ENSLBET00000001221.1
    Conserved Domains (2) summary
    cd02662
    Location:65 → 491
    Peptidase_C19F; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    cl02553
    Location:65 → 196
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

  2. XM_020643285.2 → XP_020498941.1  ubiquitin carboxyl-terminal hydrolase 30 isoform X2

    UniProtKB/TrEMBL
    A0A3Q3E2K6
    Conserved Domains (2) summary
    cd02662
    Location:39 → 465
    Peptidase_C19F; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    cl02553
    Location:39 → 170
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

  3. XM_020643284.2 → XP_020498940.1  ubiquitin carboxyl-terminal hydrolase 30 isoform X2

    UniProtKB/TrEMBL
    A0A3Q3E2K6
    Conserved Domains (2) summary
    cd02662
    Location:39 → 465
    Peptidase_C19F; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    cl02553
    Location:39 → 170
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

  4. XM_020643286.2 → XP_020498942.1  ubiquitin carboxyl-terminal hydrolase 30 isoform X2

    UniProtKB/TrEMBL
    A0A3Q3E2K6
    Conserved Domains (2) summary
    cd02662
    Location:39 → 465
    Peptidase_C19F; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    cl02553
    Location:39 → 170
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
Nucleotide Protein
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