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syne3 spectrin repeat containing, nuclear envelope family member 3 [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109989481, updated on 14-Mar-2024

Summary

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Gene symbol
syne3
Gene description
spectrin repeat containing, nuclear envelope family member 3
See related
Ensembl:ENSLBEG00000008784
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
101 current BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114575.1 (1028847..1066959)

NW_018114575.1Genomic Context describing neighboring genes Neighboring gene ras-related GTP binding D Neighboring gene gamma-aminobutyric acid type A receptor subunit rho2a Neighboring gene calmin a Neighboring gene dicer 1, ribonuclease type III

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018114575 Unplaced Scaffold Reference BallGen_V1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of meiotic nuclear membrane microtubule tethering complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: nesprin-3
Names
nesprin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Labrus bergylta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BallGen_V1

Genomic

  1. NW_018114575.1 Reference BallGen_V1

    Range
    1028847..1066959
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020641258.2 → XP_020496914.1  LOW QUALITY PROTEIN: nesprin-3

    UniProtKB/TrEMBL
    A0A3Q3LSF8
    Related
    ENSLBEP00000011445.1, ENSLBET00000012036.1
    Conserved Domains (3) summary
    pfam10541
    Location:1132 → 1160
    KASH; Nuclear envelope localization domain
    cl02488
    Location:114 → 325
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl27157
    Location:360 → 676
    Rad50_zn_hook; Rad50 zinc hook motif
Nucleotide Protein
Heading Accession and Version

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