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socs4 suppressor of cytokine signaling 4 [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109988659, updated on 14-Mar-2024

Summary

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Gene symbol
socs4
Gene description
suppressor of cytokine signaling 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
Orthologs
zebrafish all
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Genomic context

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See socs4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114557.1 (256820..261150)

NW_018114557.1Genomic Context describing neighboring genes Neighboring gene sodium/potassium/calcium exchanger 1-like Neighboring gene C-myc promoter-binding protein-like Neighboring gene WD repeat and HMG-box DNA binding protein 1 Neighboring gene GTP cyclohydrolase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018114557 Unplaced Scaffold Reference BallGen_V1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of phosphatidylinositol 3-kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: suppressor of cytokine signaling 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Labrus bergylta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BallGen_V1

Genomic

  1. NW_018114557.1 Reference BallGen_V1

    Range
    256820..261150
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020640214.2 → XP_020495870.1  LOW QUALITY PROTEIN: suppressor of cytokine signaling 4

    Conserved Domains (3) summary
    pfam12610
    Location:59 → 112
    SOCS; Suppressor of cytokine signalling
    cl02533
    Location:345 → 386
    SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...
    cl15255
    Location:236 → 336
    SH2; Src homology 2 (SH2) domain
Nucleotide Protein
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