U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC109986268 calsyntenin 2 [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109986268, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC109986268
Gene description
calsyntenin 2
See related
Ensembl:ENSLBEG00000018525
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
Also known as
clstn2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114508.1 (1253305..1491918, complement)

NW_018114508.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 36 Neighboring gene splA/ryanodine receptor domain and SOCS box containing 4 Neighboring gene lysophosphatidic acid receptor 6-like Neighboring gene retinol binding protein 2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_018114508 Unplaced Scaffold Reference BallGen_V1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables X11-like protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables amyloid-beta binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables kinesin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
calsyntenin-2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Labrus bergylta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BallGen_V1

Genomic

  1. NW_018114508.1 Reference BallGen_V1

    Range
    1253305..1491918 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020636858.2 → XP_020492514.1  calsyntenin-2

    UniProtKB/TrEMBL
    A0A3Q3FXY3, A0A3Q3MTN0
    Related
    ENSLBEP00000024214.1, ENSLBET00000025468.1
    Conserved Domains (2) summary
    cd11304
    Location:149 → 241
    Cadherin_repeat; Cadherin tandem repeat domain
    cl22861
    Location:401 → 512
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.