U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

vps4b vacuolar protein sorting 4 homolog B [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109985694, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
vps4b
Gene description
vacuolar protein sorting 4 homolog B
See related
Ensembl:ENSLBEG00000018938
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114419.1 (3754670..3763898)

NW_018114419.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 39C Neighboring gene laminin subunit alpha 3 Neighboring gene 3-ketodihydrosphingosine reductase Neighboring gene BCL2 apoptosis regulator b

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_018114419 Unplaced Scaffold Reference BallGen_V1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuole organization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
vacuolar protein sorting-associated protein 4B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Labrus bergylta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BallGen_V1

Genomic

  1. NW_018114419.1 Reference BallGen_V1

    Range
    3754670..3763898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020636091.2 → XP_020491747.1  vacuolar protein sorting-associated protein 4B isoform X1

    UniProtKB/TrEMBL
    A0A3Q3MV06
    Conserved Domains (3) summary
    COG0464
    Location:185 → 419
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
    pfam09336
    Location:445 → 505
    Vps4_C; Vps4 C terminal oligomerization domain
    cl00299
    Location:77 → 138
    MIT; domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...

  2. XM_020636099.2 → XP_020491755.1  vacuolar protein sorting-associated protein 4B isoform X2

    UniProtKB/TrEMBL
    A0A3Q3FXB0, A0A3Q3MV06
    Related
    ENSLBEP00000024832.1, ENSLBET00000026096.1
    Conserved Domains (3) summary
    COG0464
    Location:115 → 349
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
    pfam09336
    Location:375 → 435
    Vps4_C; Vps4 C terminal oligomerization domain
    cl00299
    Location:5 → 68
    MIT; domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.