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sall3a spalt-like transcription factor 3a [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109984342, updated on 14-Mar-2024

Summary

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Gene symbol
sall3a
Gene description
spalt-like transcription factor 3a
See related
Ensembl:ENSLBEG00000005152
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
Also known as
sall3
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114418.1 (2291700..2305709, complement)

NW_018114418.1Genomic Context describing neighboring genes Neighboring gene riboflavin transporter 2-like Neighboring gene nuclear factor of activated T-cells, cytoplasmic 1-like Neighboring gene uncharacterized LOC109984136 Neighboring gene DEP domain containing 1B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018114418 Unplaced Scaffold Reference BallGen_V1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sal-like protein 3
Names
spalt like transcription factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Labrus bergylta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BallGen_V1

Genomic

  1. NW_018114418.1 Reference BallGen_V1

    Range
    2291700..2305709 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020634447.2 → XP_020490103.1  sal-like protein 3

    UniProtKB/TrEMBL
    A0A3Q3EGN1, A0A3Q3EGP2
    Related
    ENSLBEP00000006671.1, ENSLBET00000007010.1
    Conserved Domains (5) summary
    COG5048
    Location:466 → 796
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:763 → 783
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:1147 → 1169
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:775 → 800
    zf-H2C2_2; Zinc-finger double domain
    cl26794
    Location:935 → 1036
    COG4870; Cysteine protease, C1A family [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version

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