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carhsp1 calcium regulated heat stable protein 1 [ Monopterus albus (swamp eel) ]

Gene ID: 109967580, updated on 14-Mar-2024

Summary

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Gene symbol
carhsp1
Gene description
calcium regulated heat stable protein 1
See related
Ensembl:ENSMALG00000019090
Gene type
protein coding
RefSeq status
MODEL
Organism
Monopterus albus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Synbranchidae; Monopterus
Orthologs
human zebrafish all
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Genomic context

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See carhsp1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current M_albus_1.0 (GCF_001952655.1) Unplaced Scaffold NW_018128011.1 (49980..70406)

NW_018128011.1Genomic Context describing neighboring genes Neighboring gene deoxyribonuclease I Neighboring gene N-acetyltransferase 15 (GCN5-related, putative) Neighboring gene neurabin-2-like Neighboring gene phosphoribosyl pyrophosphate synthase-associated protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018128011.1 Unplaced Scaffold Reference M_albus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of mRNA stability IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-regulated heat-stable protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Monopterus albus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_albus_1.0 Primary Assembly

Genomic

  1. NW_018128011.1 Reference M_albus_1.0 Primary Assembly

    Range
    49980..70406
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020613246.1 → XP_020468902.1  calcium-regulated heat-stable protein 1

    UniProtKB/TrEMBL
    A0A3Q3K3R9
    Related
    ENSMALP00000027500.1, ENSMALT00000028005.1
    Conserved Domains (2) summary
    cd04458
    Location:79 → 143
    CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
    cl26464
    Location:5 → 67
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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