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LOC109929127 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [ Rhincodon typus (whale shark) ]

Gene ID: 109929127, updated on 30-Nov-2023

Summary

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Gene symbol
LOC109929127
Gene description
SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1
See related
EnsemblRapid:ENSRTYG00015017348
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhincodon typus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Rhincodontidae; Rhincodon
Also known as
spock1
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Genomic context

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Location:
chromosome: 12
Exon count:
12
Annotation release Status Assembly Chr Location
101 current sRhiTyp1.1 (GCF_021869965.1) 12 NC_063343.1 (39586130..40054142, complement)
100 previous assembly ASM164234v2 (GCF_001642345.1) Unplaced Scaffold NW_018060007.1 (62404..79911, complement)

Chromosome 12 - NC_063343.1Genomic Context describing neighboring genes Neighboring gene kelch-like protein 3 Neighboring gene 40S ribosomal protein S3-like Neighboring gene methylsterol monooxygenase 1-like Neighboring gene short transient receptor potential channel 7 Neighboring gene mothers against decapentaplegic homolog 5 Neighboring gene male-specific lethal 3 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
testican-1
Names
SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhincodon typus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference sRhiTyp1.1

Genomic

  1. NC_063343.1 Reference sRhiTyp1.1

    Range
    39586130..40054142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048603880.1 → XP_048459837.1  testican-1 isoform X2

    Related
    ENSRTYP00015027187.1, ENSRTYT00015030211.1

  2. XM_048603879.1 → XP_048459836.1  testican-1 isoform X1

    Related
    ENSRTYP00015027185.1, ENSRTYT00015030209.1
Nucleotide Protein
Heading Accession and Version

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