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tmco3 transmembrane and coiled-coil domains 3 [ Rhincodon typus (whale shark) ]

Gene ID: 109916167, updated on 14-Mar-2024

Summary

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Gene symbol
tmco3
Gene description
transmembrane and coiled-coil domains 3
See related
EnsemblRapid:ENSRTYG00015012995
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhincodon typus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Rhincodontidae; Rhincodon
Orthologs
human zebrafish all
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Genomic context

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See tmco3 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
17
Annotation release Status Assembly Chr Location
101 current sRhiTyp1.1 (GCF_021869965.1) 11 NC_063342.1 (72838464..72901541, complement)
100 previous assembly ASM164234v2 (GCF_001642345.1) Unplaced Scaffold NW_018035303.1 (91959..131063, complement)

Chromosome 11 - NC_063342.1Genomic Context describing neighboring genes Neighboring gene mitochondrial translational release factor 1 Neighboring gene kelch repeat and BTB (POZ) domain containing 7 Neighboring gene uncharacterized LOC125484360 Neighboring gene patched domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables potassium:proton antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in potassium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and coiled-coil domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhincodon typus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference sRhiTyp1.1

Genomic

  1. NC_063342.1 Reference sRhiTyp1.1

    Range
    72838464..72901541 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048602618.1 → XP_048458575.1  transmembrane and coiled-coil domain-containing protein 3 isoform X4

  2. XM_020515874.2 → XP_020371463.1  transmembrane and coiled-coil domain-containing protein 3 isoform X2

    Conserved Domains (2) summary
    pfam00999
    Location:277 → 603
    Na_H_Exchanger; Sodium/hydrogen exchanger family
    cl25732
    Location:121 → 201
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_048602616.1 → XP_048458573.1  transmembrane and coiled-coil domain-containing protein 3 isoform X3

  4. XM_020515873.2 → XP_020371462.1  transmembrane and coiled-coil domain-containing protein 3 isoform X1

    Related
    ENSRTYP00015020176.1, ENSRTYT00015022399.1
    Conserved Domains (2) summary
    pfam00999
    Location:275 → 646
    Na_H_Exchanger; Sodium/hydrogen exchanger family
    cl25732
    Location:121 → 201
    SMC_N; RecF/RecN/SMC N terminal domain

  5. XM_048602619.1 → XP_048458576.1  transmembrane and coiled-coil domain-containing protein 3 isoform X5

RNA

  1. XR_007263170.1 RNA Sequence

  2. XR_007263169.1 RNA Sequence

  3. XR_007263171.1 RNA Sequence

  4. XR_007263168.1 RNA Sequence

  5. XR_007263172.1 RNA Sequence

  6. XR_007263173.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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