U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC109913459 tRNA selenocysteine 1-associated protein 1 [ Rhincodon typus (whale shark) ]

Gene ID: 109913459, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC109913459
Gene description
tRNA selenocysteine 1-associated protein 1
See related
EnsemblRapid:ENSRTYG00015016886
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhincodon typus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Rhincodontidae; Rhincodon
Also known as
trnau1ap
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 27
Exon count:
10
Annotation release Status Assembly Chr Location
101 current sRhiTyp1.1 (GCF_021869965.1) 27 NC_063358.1 (8063166..8090654)
100 previous assembly ASM164234v2 (GCF_001642345.1) Unplaced Scaffold NW_018032521.1 (269624..296860, complement)

Chromosome 27 - NC_063358.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 8a Neighboring gene small Cajal body-specific RNA 1 Neighboring gene syntaxin 12 Neighboring gene CCN family member 2-like Neighboring gene uncharacterized LOC125486234

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in selenocysteine incorporation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
tRNA selenocysteine 1-associated protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Rhincodon typus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference sRhiTyp1.1

Genomic

  1. NC_063358.1 Reference sRhiTyp1.1

    Range
    8063166..8090654
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020512970.2 → XP_020368559.1  tRNA selenocysteine 1-associated protein 1 isoform X1

    Related
    ENSRTYP00015026455.1, ENSRTYT00015029397.1
    Conserved Domains (2) summary
    cd12610
    Location:4 → 88
    RRM1_SECp43; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43)
    cd12612
    Location:96 → 177
    RRM2_SECp43; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43)

  2. XM_020512971.2 → XP_020368560.1  tRNA selenocysteine 1-associated protein 1 isoform X2

    Conserved Domains (2) summary
    cd12610
    Location:4 → 87
    RRM1_SECp43; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43)
    cd12612
    Location:95 → 176
    RRM2_SECp43; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43)

  3. XM_020512972.2 → XP_020368561.1  tRNA selenocysteine 1-associated protein 1 isoform X3

    Related
    ENSRTYP00015026451.1, ENSRTYT00015029393.1
    Conserved Domains (2) summary
    cd12610
    Location:4 → 88
    RRM1_SECp43; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43)
    cd12612
    Location:96 → 177
    RRM2_SECp43; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.