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LOC109902649 methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109902649, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109902649
Gene description
methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
See related
Ensembl:ENSOKIG00005022948
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
mccc1
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Genomic context

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Location:
chromosome: LG13
Exon count:
19
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG13 NC_034186.2 (28584292..28592191, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG13 NC_034186.1 (45323157..45332008)

Linkage Group LG13 - NC_034186.2Genomic Context describing neighboring genes Neighboring gene impact RWD domain protein Neighboring gene probable phospholipid-transporting ATPase IF Neighboring gene kininogen-1-like Neighboring gene lysosome-associated membrane glycoprotein 3 Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylcrotonoyl-CoA carboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
Names
methylcrotonoyl-CoA carboxylase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034186.2 Reference Okis_V2 Primary Assembly

    Range
    28584292..28592191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031785946.1 → XP_031641806.1  methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A8C7HC14
    Related
    ENSOKIP00005055878.1, ENSOKIT00005059329.1
    Conserved Domains (1) summary
    COG4770
    Location:33 → 688
    PccA; Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid transport and metabolism]

  2. XM_020499188.2 → XP_020354777.1  methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8C7HCV9
    Conserved Domains (1) summary
    COG4770
    Location:49 → 704
    PccA; Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid transport and metabolism]

  3. XM_020499189.2 → XP_020354778.1  methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A8C7HCV9, A0A8C7HD82
    Related
    ENSOKIP00005055797.1, ENSOKIT00005059230.1
    Conserved Domains (1) summary
    COG4770
    Location:36 → 691
    PccA; Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid transport and metabolism]

  4. XM_020499190.2 → XP_020354779.1  methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform X4

    Conserved Domains (1) summary
    cl39082
    Location:49 → 596
    PycA; Pyruvate carboxylase [Energy production and conversion]

RNA

  1. XR_004202364.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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