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LOC109902629 sterol O-acyltransferase 1 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109902629, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109902629
Gene description
sterol O-acyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
soat1
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Genomic context

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Location:
chromosome: LG13
Exon count:
17
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG13 NC_034186.2 (30449419..30459439)
100 previous assembly Okis_V1 (GCF_002021735.1) LG13 NC_034186.1 (43366142..43375665, complement)

Linkage Group LG13 - NC_034186.2Genomic Context describing neighboring genes Neighboring gene sterol O-acyltransferase 1-like Neighboring gene uncharacterized LOC116353058 Neighboring gene tyrosine-protein kinase ABL2 Neighboring gene oxysterol binding protein-like 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cholesterol O-acyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cholesterol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables fatty-acyl-CoA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol efflux IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cholesterol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sterol O-acyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034186.2 Reference Okis_V2 Primary Assembly

    Range
    30449419..30459439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031785985.1 → XP_031641845.1  sterol O-acyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C7HX05
    Conserved Domains (1) summary
    cl00738
    Location:284 → 516
    MBOAT; membrane-bound O-acyltransferase family

  2. XM_020499147.2 → XP_020354736.2  sterol O-acyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7HX05
    Conserved Domains (1) summary
    cl00738
    Location:297 → 529
    MBOAT; membrane-bound O-acyltransferase family

  3. XM_020499145.2 → XP_020354734.2  sterol O-acyltransferase 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C7HX05
    Conserved Domains (1) summary
    cl00738
    Location:294 → 526
    MBOAT; membrane-bound O-acyltransferase family
Nucleotide Protein
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