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LOC109895359 methenyltetrahydrofolate synthase domain-containing protein [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109895359, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109895359
Gene description
methenyltetrahydrofolate synthase domain-containing protein
See related
Ensembl:ENSOKIG00005005302
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
mthfsd
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Genomic context

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Location:
chromosome: LG8
Exon count:
9
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG8 NC_034181.2 (68611455..68625686)
100 previous assembly Okis_V1 (GCF_002021735.1) LG8 NC_034181.1 (4466928..4481075, complement)

Linkage Group LG8 - NC_034181.2Genomic Context describing neighboring genes Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene growth arrest-specific 8 Neighboring gene fatty acyl-CoA hydrolase precursor, medium chain Neighboring gene forkhead box protein F1-like Neighboring gene uncharacterized LOC109894988

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methenyltetrahydrofolate synthase domain-containing protein
Names
methenyltetrahydrofolate synthetase domain containing

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034181.2 Reference Okis_V2 Primary Assembly

    Range
    68611455..68625686
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020488990.2 → XP_020344579.2  methenyltetrahydrofolate synthase domain-containing protein isoform X2

    UniProtKB/TrEMBL
    A0A8C7F3T1
    Related
    ENSOKIP00005011676.1, ENSOKIT00005012487.1
    Conserved Domains (2) summary
    cl00360
    Location:13 → 210
    5-FTHF_cyc-lig; 5-formyltetrahydrofolate cyclo-ligase family
    cl17169
    Location:416 → 487
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_020488989.2 → XP_020344578.2  methenyltetrahydrofolate synthase domain-containing protein isoform X1

    Conserved Domains (2) summary
    cl00360
    Location:13 → 210
    5-FTHF_cyc-lig; 5-formyltetrahydrofolate cyclo-ligase family
    cl17169
    Location:416 → 487
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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