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bbof1 basal body orientation factor 1 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109894491, updated on 18-Aug-2023

Summary

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Gene symbol
bbof1
Gene description
basal body orientation factor 1
See related
Ensembl:ENSOKIG00005006085
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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Location:
chromosome: LG7
Exon count:
11
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG7 NC_034180.2 (32782709..32794798)
100 previous assembly Okis_V1 (GCF_002021735.1) LG7 NC_034180.1 (30733587..30748176)

Linkage Group LG7 - NC_034180.2Genomic Context describing neighboring genes Neighboring gene coenzyme Q6, monooxygenase Neighboring gene ectonucleoside triphosphate diphosphohydrolase 5 Neighboring gene aldehyde dehydrogenase 6 family member A1 Neighboring gene maleylacetoacetate isomerase Neighboring gene protein TMED8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
basal body-orientation factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034180.2 Reference Okis_V2 Primary Assembly

    Range
    32782709..32794798
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020488020.2 → XP_020343609.1  basal body-orientation factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C7F4Z0
    Related
    ENSOKIP00005013525.1, ENSOKIT00005014420.1
    Conserved Domains (2) summary
    pfam14988
    Location:87 → 251
    DUF4515; Domain of unknown function (DUF4515)
    cl25732
    Location:57 → 405
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_020488019.2 → XP_020343608.1  basal body-orientation factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7DHE2, A0A8C7F4Z0
    Related
    ENSOKIP00005013502.1, ENSOKIT00005014395.1
    Conserved Domains (2) summary
    pfam14988
    Location:87 → 251
    DUF4515; Domain of unknown function (DUF4515)
    cl25732
    Location:57 → 405
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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