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thumpd2 THUMP domain containing 2 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109890042, updated on 14-Mar-2024

Summary

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Gene symbol
thumpd2
Gene description
THUMP domain containing 2
See related
Ensembl:ENSOKIG00005023806
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See thumpd2 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
10
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG4 NC_034177.2 (78522796..78530236, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG4 NC_034177.1 (77291889..77305003, complement)

Linkage Group LG4 - NC_034177.2Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor (GEF) 33 Neighboring gene mitogen-activated protein kinase kinase kinase kinase 3-like Neighboring gene transmembrane protein 178A Neighboring gene uncharacterized LOC109890044 Neighboring gene sodium/calcium exchanger 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA (guanine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
THUMP domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034177.2 Reference Okis_V2 Primary Assembly

    Range
    78522796..78530236 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020482005.2 → XP_020337594.1  THUMP domain-containing protein 2

    UniProtKB/TrEMBL
    A0A8C7HD25
    Related
    ENSOKIP00005055725.1, ENSOKIT00005059138.1
    Conserved Domains (2) summary
    cd11715
    Location:197 → 257
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    cl17173
    Location:265 → 404
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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