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nat10 N-acetyltransferase 10 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109889694, updated on 14-Mar-2024

Summary

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Gene symbol
nat10
Gene description
N-acetyltransferase 10
See related
Ensembl:ENSOKIG00005010414
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG4
Exon count:
27
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG4 NC_034177.2 (53118572..53157234, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG4 NC_034177.1 (50973819..51011959, complement)

Linkage Group LG4 - NC_034177.2Genomic Context describing neighboring genes Neighboring gene protein fem-1 homolog B Neighboring gene tyrosine-protein kinase CSK-like Neighboring gene adenosine deaminase-like Neighboring gene cell cycle associated protein 1b Neighboring gene tetraspanin-18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables rRNA cytidine N-acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA acetylation involved in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA cytidine acetyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034177.2 Reference Okis_V2 Primary Assembly

    Range
    53118572..53157234 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020481310.2 → XP_020336899.2  RNA cytidine acetyltransferase

    UniProtKB/TrEMBL
    A0A8C7DNU0, A0A8C7E0K9
    Related
    ENSOKIP00005024103.1, ENSOKIT00005025555.1
    Conserved Domains (1) summary
    COG1444
    Location:24 → 915
    TmcA; tRNA(Met) C34 N-acetyltransferase TmcA [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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