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nup205 nucleoporin 205 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109889556, updated on 14-Mar-2024

Summary

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Gene symbol
nup205
Gene description
nucleoporin 205
See related
Ensembl:ENSOKIG00005038624
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG4
Exon count:
37
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG4 NC_034177.2 (43340325..43359779, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG4 NC_034177.1 (40693367..40712071, complement)

Linkage Group LG4 - NC_034177.2Genomic Context describing neighboring genes Neighboring gene ALX homeobox protein 1-like Neighboring gene bicaudal D homolog 1a Neighboring gene pyrin Neighboring gene FYVE, RhoGEF and PH domain containing 4a Neighboring gene acylglycerol kinase, mitochondrial Neighboring gene DENN domain-containing protein 11-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear pore organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore inner ring IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear pore complex protein Nup205

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034177.2 Reference Okis_V2 Primary Assembly

    Range
    43340325..43359779 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020481058.2 → XP_020336647.1  nuclear pore complex protein Nup205

    UniProtKB/TrEMBL
    A0A8C7K2D3, A0A8C7N1T0
    Related
    ENSOKIP00005094553.1, ENSOKIT00005101100.1
    Conserved Domains (1) summary
    pfam11894
    Location:14 → 1663
    Nup192; Nuclear pore complex scaffold, nucleoporins 186/192/205
Nucleotide Protein
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Gene LinkOut

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