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anapc4 anaphase promoting complex subunit 4 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109884083, updated on 14-Mar-2024

Summary

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Gene symbol
anapc4
Gene description
anaphase promoting complex subunit 4
See related
Ensembl:ENSOKIG00005008651
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG13
Exon count:
30
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG13 NC_034186.2 (25848355..25859248, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) Unplaced Scaffold NW_018091842.1 (136682..147566, complement)

Linkage Group LG13 - NC_034186.2Genomic Context describing neighboring genes Neighboring gene sodium/bile acid cotransporter 4 Neighboring gene SLAIN motif-containing protein 2 Neighboring gene palladin, cytoskeletal associated protein Neighboring gene carbonyl reductase 4 Neighboring gene SH3 domain containing ring finger 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anaphase-promoting complex-dependent catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of mitotic metaphase/anaphase transition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K11-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of anaphase-promoting complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anaphase-promoting complex subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034186.2 Reference Okis_V2 Primary Assembly

    Range
    25848355..25859248 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020476084.2 → XP_020331673.1  anaphase-promoting complex subunit 4 isoform X4

    UniProtKB/TrEMBL
    A0A8C7DYX3, A0A8C7DYZ8
    Related
    ENSOKIP00005022419.1, ENSOKIT00005023813.1
    Conserved Domains (4) summary
    COG2319
    Location:13 → 233
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:16 → 54
    7WD40; WD40 repeat [structural motif]
    pfam12894
    Location:19 → 111
    ANAPC4_WD40; Anaphase-promoting complex subunit 4 WD40 domain
    pfam12896
    Location:226 → 425
    ANAPC4; Anaphase-promoting complex, cyclosome, subunit 4

  2. XM_031785851.1 → XP_031641711.1  anaphase-promoting complex subunit 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C7DYZ8
    Conserved Domains (4) summary
    COG2319
    Location:21 → 241
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:24 → 62
    7WD40; WD40 repeat [structural motif]
    pfam12894
    Location:27 → 119
    ANAPC4_WD40; Anaphase-promoting complex subunit 4 WD40 domain
    pfam12896
    Location:234 → 433
    ANAPC4; Anaphase-promoting complex, cyclosome, subunit 4

  3. XM_020476085.2 → XP_020331674.1  anaphase-promoting complex subunit 4 isoform X4

    UniProtKB/TrEMBL
    A0A8C7DYX3, A0A8C7DYZ8
    Related
    ENSOKIP00005023007.1, ENSOKIT00005024428.1
    Conserved Domains (4) summary
    COG2319
    Location:13 → 233
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:16 → 54
    7WD40; WD40 repeat [structural motif]
    pfam12894
    Location:19 → 111
    ANAPC4_WD40; Anaphase-promoting complex subunit 4 WD40 domain
    pfam12896
    Location:226 → 425
    ANAPC4; Anaphase-promoting complex, cyclosome, subunit 4

  4. XM_031785853.1 → XP_031641713.1  anaphase-promoting complex subunit 4 isoform X3

    UniProtKB/TrEMBL
    A0A8C7DYZ8
    Conserved Domains (4) summary
    COG2319
    Location:21 → 241
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:24 → 62
    7WD40; WD40 repeat [structural motif]
    pfam12894
    Location:27 → 119
    ANAPC4_WD40; Anaphase-promoting complex subunit 4 WD40 domain
    pfam12896
    Location:234 → 433
    ANAPC4; Anaphase-promoting complex, cyclosome, subunit 4

  5. XM_031785852.1 → XP_031641712.1  anaphase-promoting complex subunit 4 isoform X2

    UniProtKB/TrEMBL
    A0A8C7DYZ8
    Conserved Domains (4) summary
    COG2319
    Location:21 → 239
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:24 → 62
    7WD40; WD40 repeat [structural motif]
    pfam12894
    Location:27 → 119
    ANAPC4_WD40; Anaphase-promoting complex subunit 4 WD40 domain
    pfam12896
    Location:232 → 431
    ANAPC4; Anaphase-promoting complex, cyclosome, subunit 4

  6. XM_020476088.2 → XP_020331677.1  anaphase-promoting complex subunit 4 isoform X5

    UniProtKB/TrEMBL
    A0A8C7DYZ8
    Conserved Domains (4) summary
    COG2319
    Location:13 → 233
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:16 → 54
    7WD40; WD40 repeat [structural motif]
    pfam12894
    Location:19 → 111
    ANAPC4_WD40; Anaphase-promoting complex subunit 4 WD40 domain
    pfam12896
    Location:226 → 425
    ANAPC4; Anaphase-promoting complex, cyclosome, subunit 4

  7. XM_031785854.1 → XP_031641714.1  anaphase-promoting complex subunit 4 isoform X5

    UniProtKB/TrEMBL
    A0A8C7DYZ8
    Related
    ENSOKIP00005023077.1, ENSOKIT00005024501.1
    Conserved Domains (4) summary
    COG2319
    Location:13 → 233
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:16 → 54
    7WD40; WD40 repeat [structural motif]
    pfam12894
    Location:19 → 111
    ANAPC4_WD40; Anaphase-promoting complex subunit 4 WD40 domain
    pfam12896
    Location:226 → 425
    ANAPC4; Anaphase-promoting complex, cyclosome, subunit 4
Nucleotide Protein
Heading Accession and Version

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