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pheta1 PH domain containing endocytic trafficking adaptor 1 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109875364, updated on 14-Mar-2024

Summary

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Gene symbol
pheta1
Gene description
PH domain containing endocytic trafficking adaptor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
fam109a
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG3
Exon count:
4
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG3 NC_034176.2 (11903737..11921316)
100 previous assembly Okis_V1 (GCF_002021735.1) LG3 NC_034176.1 (4959994..4963714)

Linkage Group LG3 - NC_034176.2Genomic Context describing neighboring genes Neighboring gene Dmx like 1 Neighboring gene hydroxysteroid (17-beta) dehydrogenase 4 Neighboring gene proline rich 16 Neighboring gene SH2B adaptor protein 3 Neighboring gene ataxin-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in receptor recycling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in recycling endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sesquipedalian-1
Names
family with sequence similarity 109 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034176.2 Reference Okis_V2 Primary Assembly

    Range
    11903737..11921316
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031817327.1 → XP_031673187.1  sesquipedalian-1

    UniProtKB/TrEMBL
    A0A8C7DLS6
    Conserved Domains (1) summary
    cd13288
    Location:11 → 130
    PH_Ses; Sesquipedalian family Pleckstrin homology (PH) domain

  2. XM_020467720.2 → XP_020323309.1  sesquipedalian-1

    UniProtKB/TrEMBL
    A0A8C7DLS6
    Conserved Domains (1) summary
    cd13288
    Location:11 → 130
    PH_Ses; Sesquipedalian family Pleckstrin homology (PH) domain

  3. XM_020467714.2 → XP_020323303.1  sesquipedalian-1

    UniProtKB/TrEMBL
    A0A8C7DLS6
    Conserved Domains (1) summary
    cd13288
    Location:11 → 130
    PH_Ses; Sesquipedalian family Pleckstrin homology (PH) domain

  4. XM_020467706.2 → XP_020323295.1  sesquipedalian-1

    UniProtKB/TrEMBL
    A0A8C7DLS6
    Conserved Domains (1) summary
    cd13288
    Location:11 → 130
    PH_Ses; Sesquipedalian family Pleckstrin homology (PH) domain
Nucleotide Protein
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