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upk1b uroplakin 1B [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109874270, updated on 14-Dec-2023

Summary

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Gene symbol
upk1b
Gene description
uroplakin 1B
See related
Ensembl:ENSOKIG00005049384
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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Location:
chromosome: LG29
Exon count:
11
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG29 NC_034202.2 (30029930..30040289)
100 previous assembly Okis_V1 (GCF_002021735.1) LG29 NC_034202.1 (29811603..29821972)

Linkage Group LG29 - NC_034202.2Genomic Context describing neighboring genes Neighboring gene Utp14 domain-containing protein Neighboring gene zinc finger and BTB domain containing 20 Neighboring gene Rho GTPase activating protein 31 Neighboring gene UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4 Neighboring gene calcium-sensing receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uroplakin-1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034202.2 Reference Okis_V2 Primary Assembly

    Range
    30029930..30040289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020466119.2 → XP_020321708.1  uroplakin-1b isoform X1

    UniProtKB/TrEMBL
    A0A8C7L7T6
    Related
    ENSOKIP00005113631.1, ENSOKIT00005121585.1
    Conserved Domains (2) summary
    cd03156
    Location:121 → 235
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:12 → 258
    Tetraspannin; Tetraspanin family

  2. XM_031809047.1 → XP_031664907.1  uroplakin-1b isoform X2

    Conserved Domains (1) summary
    cd03156
    Location:91 → 205
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
Nucleotide Protein
Heading Accession and Version

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