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spidr scaffold protein involved in DNA repair [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109871958, updated on 14-Mar-2024

Summary

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Gene symbol
spidr
Gene description
scaffold protein involved in DNA repair
See related
Ensembl:ENSOKIG00005015683
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG27
Exon count:
20
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG27 NC_034200.2 (15277501..15361418, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG27 NC_034200.1 (12084010..12175630, complement)

Linkage Group LG27 - NC_034200.2Genomic Context describing neighboring genes Neighboring gene DNA replication licensing factor mcm4-A-like Neighboring gene CCAAT/enhancer-binding protein delta-like Neighboring gene microtubule-associated protein, RP/EB family, member 2 Neighboring gene dystrobrevin alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of establishment of protein localization to chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA repair-scaffolding protein
Names
scaffolding protein involved in DNA repair

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034200.2 Reference Okis_V2 Primary Assembly

    Range
    15277501..15361418 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031806890.1 → XP_031662750.1  DNA repair-scaffolding protein isoform X2

    UniProtKB/TrEMBL
    A0A8C7M8S9
    Related
    ENSOKIP00005036736.1, ENSOKIT00005038800.1
    Conserved Domains (2) summary
    pfam14950
    Location:6 → 419
    DUF4502; Domain of unknown function (DUF4502)
    pfam14951
    Location:570 → 969
    DUF4503; Domain of unknown function (DUF4503)

  2. XM_020463007.2 → XP_020318596.1  DNA repair-scaffolding protein isoform X1

    UniProtKB/TrEMBL
    A0A8C7G489
    Related
    ENSOKIP00005036711.1, ENSOKIT00005038775.1
    Conserved Domains (2) summary
    pfam14950
    Location:6 → 419
    DUF4502; Domain of unknown function (DUF4502)
    pfam14951
    Location:570 → 989
    DUF4503; Domain of unknown function (DUF4503)
Nucleotide Protein
Heading Accession and Version

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