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LOC109870724 DEAD-box helicase 3 X-linked [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109870724, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109870724
Gene description
DEAD-box helicase 3 X-linked
See related
Ensembl:ENSOKIG00005042369
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
ddx3x
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Genomic context

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Location:
chromosome: LG26
Exon count:
20
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG26 NC_034199.2 (19748457..19769105, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG26 NC_034199.1 (6595333..6615983)

Linkage Group LG26 - NC_034199.2Genomic Context describing neighboring genes Neighboring gene calcium/calmodulin dependent serine protein kinase Neighboring gene cysteinyl leukotriene receptor 2-like Neighboring gene G protein-coupled receptor 34 Neighboring gene ubiquitin specific peptidase 9 X-linked Neighboring gene ribosomal protein L8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in gamete generation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DDX3X; ATP-dependent RNA helicase DDX3Y; putative ATP-dependent RNA helicase an3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034199.2 Reference Okis_V2 Primary Assembly

    Range
    19748457..19769105 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020461344.2 → XP_020316933.1  putative ATP-dependent RNA helicase an3 isoform X1

    UniProtKB/TrEMBL
    A0A8C7F006
    Conserved Domains (2) summary
    PTZ00110
    Location:103 → 666
    PTZ00110; helicase; Provisional
    cd18051
    Location:218 → 471
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  2. XM_031805767.1 → XP_031661627.1  ATP-dependent RNA helicase DDX3X isoform X10

    UniProtKB/TrEMBL
    A0A8C7F006
    Conserved Domains (2) summary
    cd18787
    Location:396 → 526
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:138 → 391
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  3. XM_020461350.2 → XP_020316939.1  ATP-dependent RNA helicase DDX3X isoform X9

    UniProtKB/TrEMBL
    A0A8C7F006
    Conserved Domains (2) summary
    cd18787
    Location:396 → 542
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:138 → 391
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  4. XM_031805766.1 → XP_031661626.1  ATP-dependent RNA helicase DDX3X isoform X8

    UniProtKB/TrEMBL
    A0A8C7F006, A0A8C7KB94
    Related
    ENSOKIP00005097678.1, ENSOKIT00005104677.1
    Conserved Domains (2) summary
    cd18787
    Location:433 → 563
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:175 → 428
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  5. XM_031805765.1 → XP_031661625.1  ATP-dependent RNA helicase DDX3X isoform X7

    UniProtKB/TrEMBL
    A0A8C7F006
    Conserved Domains (2) summary
    cd18787
    Location:433 → 579
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:175 → 428
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  6. XM_020461349.2 → XP_020316938.1  ATP-dependent RNA helicase DDX3Y isoform X5

    UniProtKB/TrEMBL
    A0A8C7F006
    Related
    ENSOKIP00005097928.1, ENSOKIT00005104950.1
    Conserved Domains (2) summary
    PTZ00110
    Location:83 → 630
    PTZ00110; helicase; Provisional
    cd18051
    Location:198 → 451
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  7. XM_020461346.2 → XP_020316935.1  ATP-dependent RNA helicase DDX3Y isoform X3

    UniProtKB/TrEMBL
    A0A8C7F006
    Related
    ENSOKIP00005097863.1, ENSOKIT00005104882.1
    Conserved Domains (2) summary
    PTZ00110
    Location:83 → 646
    PTZ00110; helicase; Provisional
    cd18051
    Location:198 → 451
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  8. XM_031805764.1 → XP_031661624.1  ATP-dependent RNA helicase DDX3Y isoform X6

    UniProtKB/TrEMBL
    A0A8C7F006, A0A8C7K6A4
    Related
    ENSOKIP00005097651.1, ENSOKIT00005104649.1
    Conserved Domains (2) summary
    cd18787
    Location:453 → 583
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:195 → 448
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  9. XM_020461348.2 → XP_020316937.1  ATP-dependent RNA helicase DDX3Y isoform X4

    UniProtKB/TrEMBL
    A0A8C7F006
    Conserved Domains (2) summary
    cd18787
    Location:453 → 599
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:195 → 448
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  10. XM_020461345.2 → XP_020316934.1  putative ATP-dependent RNA helicase an3 isoform X2

    UniProtKB/TrEMBL
    A0A8C7K700
    Conserved Domains (2) summary
    PTZ00110
    Location:103 → 650
    PTZ00110; helicase; Provisional
    cd18051
    Location:218 → 471
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3
Nucleotide Protein
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