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dcp2 decapping mRNA 2 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109867994, updated on 14-Mar-2024

Summary

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Gene symbol
dcp2
Gene description
decapping mRNA 2
See related
Ensembl:ENSOKIG00005050306
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG23
Exon count:
12
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG23 NC_034196.2 (40290268..40304716, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG23 NC_034196.1 (1180445..1194722, complement)

Linkage Group LG23 - NC_034196.2Genomic Context describing neighboring genes Neighboring gene carbonic anhydrase IX Neighboring gene GATA zinc finger domain-containing protein 14-like Neighboring gene receptor accessory protein 5 Neighboring gene uncharacterized LOC116356615

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
m7GpppN-mRNA hydrolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034196.2 Reference Okis_V2 Primary Assembly

    Range
    40290268..40304716 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020457350.2 → XP_020312939.2  m7GpppN-mRNA hydrolase isoform X2

    UniProtKB/TrEMBL
    A0A8C7LDE4, A0A8C7LNN9
    Related
    ENSOKIP00005116174.1, ENSOKIT00005124242.1
    Conserved Domains (2) summary
    cd03672
    Location:97 → 246
    Dcp2p; mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical ...
    pfam05026
    Location:12 → 93
    DCP2; Dcp2, box A domain

  2. XM_031802356.1 → XP_031658216.1  m7GpppN-mRNA hydrolase isoform X3

    UniProtKB/TrEMBL
    A0A8C7LGJ5, A0A8C7LNN9
    Related
    ENSOKIP00005116184.1, ENSOKIT00005124252.1
    Conserved Domains (2) summary
    cd03672
    Location:97 → 246
    Dcp2p; mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical ...
    pfam05026
    Location:12 → 93
    DCP2; Dcp2, box A domain

  3. XM_020457349.2 → XP_020312938.2  m7GpppN-mRNA hydrolase isoform X1

    UniProtKB/TrEMBL
    A0A8C7L9W2, A0A8C7LNN9
    Related
    ENSOKIP00005116166.1, ENSOKIT00005124234.1
    Conserved Domains (2) summary
    cd03672
    Location:97 → 246
    Dcp2p; mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical ...
    pfam05026
    Location:12 → 93
    DCP2; Dcp2, box A domain

  4. XM_031802357.1 → XP_031658217.1  m7GpppN-mRNA hydrolase isoform X4

    Conserved Domains (2) summary
    cd03672
    Location:97 → 246
    Dcp2p; mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical ...
    pfam05026
    Location:12 → 93
    DCP2; Dcp2, box A domain
Nucleotide Protein
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