U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

cfap44 cilia and flagella associated protein 44 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109867567, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
cfap44
Gene description
cilia and flagella associated protein 44
See related
Ensembl:ENSOKIG00005040220
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: LG22
Exon count:
36
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG22 NC_034195.2 (35809845..35831536)
100 previous assembly Okis_V1 (GCF_002021735.1) LG22 NC_034195.1 (36276087..36296832)

Linkage Group LG22 - NC_034195.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 17 Neighboring gene tripartite motif-containing protein 16-like Neighboring gene PCNA-associated factor Neighboring gene casein kinase I-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cilia- and flagella-associated protein 44

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034195.2 Reference Okis_V2 Primary Assembly

    Range
    35809845..35831536
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020456790.2 → XP_020312379.1  cilia- and flagella-associated protein 44 isoform X1

    UniProtKB/TrEMBL
    A0A8C7JRS8, A0A8C7N0D2
    Related
    ENSOKIP00005092706.1, ENSOKIT00005099046.1
    Conserved Domains (5) summary
    COG2319
    Location:144 → 291
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:178 → 215
    7WD40; WD40 repeat [structural motif]
    pfam15665
    Location:1625 → 1793
    FAM184; Family with sequence similarity 184, A and B
    cl25539
    Location:260 → 590
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl25732
    Location:891 → 1228
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_031802053.1 → XP_031657913.1  cilia- and flagella-associated protein 44 isoform X2

    UniProtKB/TrEMBL
    A0A8C7N0D2
    Related
    ENSOKIP00005092908.1, ENSOKIT00005099254.1
    Conserved Domains (5) summary
    COG1196
    Location:1360 → 1438
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG2319
    Location:144 → 291
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:178 → 215
    7WD40; WD40 repeat [structural motif]
    pfam17380
    Location:912 → 1219
    DUF5401; Family of unknown function (DUF5401)
    cl29593
    Location:260 → 590
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.