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hsf2 heat shock transcription factor 2 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109866758, updated on 14-Mar-2024

Summary

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Gene symbol
hsf2
Gene description
heat shock transcription factor 2
See related
Ensembl:ENSOKIG00005036888
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG21
Exon count:
11
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG21 NC_034194.2 (16906459..16910480, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG21 NC_034194.1 (14676799..14680633, complement)

Linkage Group LG21 - NC_034194.2Genomic Context describing neighboring genes Neighboring gene cAMP-dependent protein kinase inhibitor alpha-like Neighboring gene serine incorporator 1 Neighboring gene gap junction alpha-1 protein Neighboring gene gap junction Cx32.2 protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heat shock factor protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034194.2 Reference Okis_V2 Primary Assembly

    Range
    16906459..16910480 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020455597.2 → XP_020311186.1  heat shock factor protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C7JAJ0, A0A8C7MX51
    Related
    ENSOKIP00005084833.1, ENSOKIT00005090651.1
    Conserved Domains (3) summary
    COG3883
    Location:101 → 177
    CwlO1; Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown]
    pfam00447
    Location:10 → 110
    HSF_DNA-bind; HSF-type DNA-binding
    pfam06546
    Location:238 → 478
    Vert_HS_TF; Vertebrate heat shock transcription factor

  2. XM_020455598.2 → XP_020311187.1  heat shock factor protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C7JDD8
    Conserved Domains (3) summary
    COG3883
    Location:101 → 177
    CwlO1; Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown]
    pfam00447
    Location:10 → 110
    HSF_DNA-bind; HSF-type DNA-binding
    pfam06546
    Location:238 → 390
    Vert_HS_TF; Vertebrate heat shock transcription factor

RNA

  1. XR_004204663.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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