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Ptprn protein tyrosine phosphatase receptor type N [ Castor canadensis (American beaver) ]

Gene ID: 109701137, updated on 14-Mar-2024

Summary

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Gene symbol
Ptprn
Gene description
protein tyrosine phosphatase receptor type N
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017873102.1 (10820..22203, complement)

NW_017873102.1Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member B2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017873102.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in secretory granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
receptor-type tyrosine-protein phosphatase-like N

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017873102.1 Reference C.can genome v1.0

    Range
    10820..22203 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020186544.1 → XP_020042133.1  receptor-type tyrosine-protein phosphatase-like N

    UniProtKB/TrEMBL
    A0A8B7WDY6
    Conserved Domains (2) summary
    pfam00102
    Location:609 → 843
    Y_phosphatase; Protein-tyrosine phosphatase
    pfam11548
    Location:344 → 432
    Receptor_IA-2; Protein-tyrosine phosphatase receptor IA-2
Nucleotide Protein
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