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Sf3a2 splicing factor 3a subunit 2 [ Castor canadensis (American beaver) ]

Gene ID: 109689924, updated on 14-Mar-2024

Summary

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Gene symbol
Sf3a2
Gene description
splicing factor 3a subunit 2
See related
Ensembl:ENSCCNG00000008025
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017870945.1 (33843..40611, complement)

NW_017870945.1Genomic Context describing neighboring genes Neighboring gene junctional sarcoplasmic reticulum protein 1 Neighboring gene anti-Mullerian hormone Neighboring gene pleckstrin homology domain containing J1 Neighboring gene DOT1 like histone lysine methyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017870945.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3A subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017870945.1 Reference C.can genome v1.0

    Range
    33843..40611 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020169007.1 → XP_020024596.1  splicing factor 3A subunit 2

    UniProtKB/TrEMBL
    A0A8B7UY34
    Conserved Domains (2) summary
    COG5246
    Location:1 → 217
    PRP11; Splicing factor 3a, subunit 2 [RNA processing and modification]
    cl25764
    Location:309 → 415
    PAT1; Topoisomerase II-associated protein PAT1

  2. XM_020169006.1 → XP_020024595.1  splicing factor 3A subunit 2

    UniProtKB/TrEMBL
    A0A8B7UY34
    Related
    ENSCCNP00000007529.1, ENSCCNT00000009968.1
    Conserved Domains (2) summary
    COG5246
    Location:1 → 217
    PRP11; Splicing factor 3a, subunit 2 [RNA processing and modification]
    cl25764
    Location:309 → 415
    PAT1; Topoisomerase II-associated protein PAT1
Nucleotide Protein
Heading Accession and Version

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