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Becn1 beclin 1 [ Castor canadensis (American beaver) ]

Gene ID: 109687340, updated on 14-Mar-2024

Summary

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Gene symbol
Becn1
Gene description
beclin 1
See related
Ensembl:ENSCCNG00000027011
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Also known as
beclin-1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017870580.1 (429363..441039, complement)

NW_017870580.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase assembly factor 3 homolog, mitochondrial Neighboring gene cyclin N-terminal domain containing 1 Neighboring gene proteasome activator subunit 3 Neighboring gene amine oxidase copper containing 2 Neighboring gene amine oxidase copper containing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017870580.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis). Lok S, et al. G3 (Bethesda), 2017 Feb 9. PMID 28087693, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to nitrogen starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in late endosome to vacuole transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of phosphatidylinositol 3-kinase complex, class III, type I IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of phosphatidylinositol 3-kinase complex, class III, type II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beclin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017870580.1 Reference C.can genome v1.0

    Range
    429363..441039 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020165183.1 → XP_020020772.1  beclin-1 isoform X1

    UniProtKB/TrEMBL
    A0A250YHX2, A0A8B7UN47
    Related
    ENSCCNP00000027976.1, ENSCCNT00000035372.1
    Conserved Domains (2) summary
    pfam15285
    Location:105 → 127
    BH3; Beclin-1 BH3 domain, Bcl-2-interacting
    pfam04111
    Location:133 → 443
    APG6; Autophagy protein Apg6

  2. XM_020165185.1 → XP_020020774.1  beclin-1 isoform X1

    UniProtKB/TrEMBL
    A0A250YHX2, A0A8B7UN47
    Conserved Domains (2) summary
    pfam15285
    Location:105 → 127
    BH3; Beclin-1 BH3 domain, Bcl-2-interacting
    pfam04111
    Location:133 → 443
    APG6; Autophagy protein Apg6

  3. XM_020165186.1 → XP_020020775.1  beclin-1 isoform X2

    UniProtKB/TrEMBL
    A0A250YGI9, A0A250YHX2
    Conserved Domains (2) summary
    pfam15285
    Location:20 → 42
    BH3; Beclin-1 BH3 domain, Bcl-2-interacting
    pfam04111
    Location:48 → 358
    APG6; Autophagy protein Apg6

  4. XM_020165184.1 → XP_020020773.1  beclin-1 isoform X1

    UniProtKB/TrEMBL
    A0A250YHX2, A0A8B7UN47
    Conserved Domains (2) summary
    pfam15285
    Location:105 → 127
    BH3; Beclin-1 BH3 domain, Bcl-2-interacting
    pfam04111
    Location:133 → 443
    APG6; Autophagy protein Apg6
Nucleotide Protein
Heading Accession and Version

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