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Znf316 zinc finger protein 316 [ Castor canadensis (American beaver) ]

Gene ID: 109685322, updated on 14-Mar-2024

Summary

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Gene symbol
Znf316
Gene description
zinc finger protein 316
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017870353.1 (101231..116005, complement)

NW_017870353.1Genomic Context describing neighboring genes Neighboring gene speedy protein E4-like Neighboring gene zinc finger protein 12 Neighboring gene zinc finger protein 853 Neighboring gene integrator complex subunit 15

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017870353.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: zinc finger protein 316

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017870353.1 Reference C.can genome v1.0

    Range
    101231..116005 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020162110.1 → XP_020017699.1  LOW QUALITY PROTEIN: zinc finger protein 316

    UniProtKB/TrEMBL
    A0A8B7UEY6
    Conserved Domains (4) summary
    smart00349
    Location:135 → 195
    KRAB; krueppel associated box
    COG5048
    Location:724 → 911
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:811 → 831
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:683 → 708
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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