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Ago1 argonaute RISC component 1 [ Castor canadensis (American beaver) ]

Gene ID: 109683668, updated on 14-Mar-2024

Summary

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Gene symbol
Ago1
Gene description
argonaute RISC component 1
See related
Ensembl:ENSCCNG00000026227
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017870144.1 (1531297..1566523, complement)

NW_017870144.1Genomic Context describing neighboring genes Neighboring gene tektin 2 Neighboring gene protein argonaute-3-like Neighboring gene ubiquitin-conjugating enzyme E2 C pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017870144.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein argonaute-1
Names
argonaute 1, RISC catalytic component
argonaute RISC catalytic component 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017870144.1 Reference C.can genome v1.0

    Range
    1531297..1566523 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020159652.1 → XP_020015241.1  protein argonaute-1 isoform X1

    UniProtKB/TrEMBL
    A0A250Y5N6, A0A8B7U717
    Conserved Domains (4) summary
    cd02846
    Location:225 → 345
    PAZ_argonaute_like; PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. ...
    cd04657
    Location:390 → 818
    Piwi_ago-like; PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the ...
    pfam08699
    Location:174 → 224
    ArgoL1; Argonaute linker 1 domain
    pfam16486
    Location:34 → 164
    ArgoN; N-terminal domain of argonaute

  2. XM_020159653.1 → XP_020015242.1  protein argonaute-1 isoform X2

    UniProtKB/TrEMBL
    A0A250Y5N6, A0A8C0XE94
    Related
    ENSCCNP00000027089.1, ENSCCNT00000034316.1
    Conserved Domains (4) summary
    cd02846
    Location:225 → 345
    PAZ_argonaute_like; PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. ...
    cd04657
    Location:390 → 815
    Piwi_ago-like; PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the ...
    pfam08699
    Location:174 → 224
    ArgoL1; Argonaute linker 1 domain
    pfam16486
    Location:34 → 164
    ArgoN; N-terminal domain of argonaute
Nucleotide Protein
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