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Nherf1 NHERF family PDZ scaffold protein 1 [ Castor canadensis (American beaver) ]

Gene ID: 109683636, updated on 14-Mar-2024

Summary

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Gene symbol
Nherf1
Gene description
NHERF family PDZ scaffold protein 1
See related
Ensembl:ENSCCNG00000002524
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Also known as
Slc9a3r1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017869514.1 (151111..170144)

NW_017869514.1Genomic Context describing neighboring genes Neighboring gene CMRF35-like molecule 2 Neighboring gene RAB37, member RAS oncogene family Neighboring gene CD300 molecule like family member f Neighboring gene transmembrane protein 104-like Neighboring gene N-acetyltransferase 9 (putative)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017869514.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis). Lok S, et al. G3 (Bethesda), 2017 Feb 9. PMID 28087693, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-membrane adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Na(+)/H(+) exchange regulatory cofactor NHE-RF1
Names
SLC9A3 regulator 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017869514.1 Reference C.can genome v1.0

    Range
    151111..170144
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020159610.1 → XP_020015199.1  Na(+)/H(+) exchange regulatory cofactor NHE-RF1

    UniProtKB/TrEMBL
    A0A250YGC4
    Related
    ENSCCNP00000002289.1, ENSCCNT00000003056.1
    Conserved Domains (2) summary
    cd00992
    Location:12 → 91
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09007
    Location:235 → 360
    EBP50_C; EBP50, C-terminal
Nucleotide Protein
Heading Accession and Version

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