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rps21 ribosomal protein S21 [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109647464, updated on 14-Mar-2024

Summary

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Gene symbol
rps21
Gene description
ribosomal protein S21
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017864635.1 (210..2500, complement)

NW_017864635.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017864635.1 Unplaced Scaffold Reference Flounder_ref_guided_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
40S ribosomal protein S21

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paralichthys olivaceus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Flounder_ref_guided_V1.0 Primary Assembly

Genomic

  1. NW_017864635.1 Reference Flounder_ref_guided_V1.0 Primary Assembly

    Range
    210..2500 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020113269.1 → XP_019968828.1  40S ribosomal protein S21

    Conserved Domains (1) summary
    pfam01249
    Location:1 → 79
    Ribosomal_S21e; Ribosomal protein S21e

  2. XM_020113270.1 → XP_019968829.1  40S ribosomal protein S21

    Conserved Domains (1) summary
    pfam01249
    Location:1 → 79
    Ribosomal_S21e; Ribosomal protein S21e

  3. XM_020113271.1 → XP_019968830.1  40S ribosomal protein S21

    Conserved Domains (1) summary
    pfam01249
    Location:1 → 79
    Ribosomal_S21e; Ribosomal protein S21e

  4. XM_020113268.1 → XP_019968827.1  40S ribosomal protein S21

    Conserved Domains (1) summary
    pfam01249
    Location:1 → 79
    Ribosomal_S21e; Ribosomal protein S21e
Nucleotide Protein
Heading Accession and Version

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