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sf3a2 splicing factor 3a, subunit 2 [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109645560, updated on 14-Mar-2024

Summary

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Gene symbol
sf3a2
Gene description
splicing factor 3a, subunit 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Orthologs
human zebrafish all
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Genomic context

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See sf3a2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859643.1 (11087910..11090928, complement)

NW_017859643.1Genomic Context describing neighboring genes Neighboring gene one cut homeobox 3b Neighboring gene leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3 Neighboring gene junctional sarcoplasmic reticulum protein 1 Neighboring gene fizzy-related protein homolog Neighboring gene pleckstrin homology domain containing, family J member 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017859643.1 Unplaced Scaffold Reference Flounder_ref_guided_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3A subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paralichthys olivaceus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Flounder_ref_guided_V1.0 Primary Assembly

Genomic

  1. NW_017859643.1 Reference Flounder_ref_guided_V1.0 Primary Assembly

    Range
    11087910..11090928 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020111180.1 → XP_019966739.1  splicing factor 3A subunit 2

    Conserved Domains (1) summary
    COG5246
    Location:1 → 216
    PRP11; Splicing factor 3a, subunit 2 [RNA processing and modification]

  2. XM_020111187.1 → XP_019966746.1  splicing factor 3A subunit 2

    Conserved Domains (1) summary
    COG5246
    Location:1 → 216
    PRP11; Splicing factor 3a, subunit 2 [RNA processing and modification]

  3. XM_020111195.1 → XP_019966754.1  splicing factor 3A subunit 2

    Conserved Domains (1) summary
    COG5246
    Location:1 → 216
    PRP11; Splicing factor 3a, subunit 2 [RNA processing and modification]
Nucleotide Protein
Heading Accession and Version

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