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zbtb8a zinc finger and BTB domain containing 8A [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109642969, updated on 14-Mar-2024

Summary

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Gene symbol
zbtb8a
Gene description
zinc finger and BTB domain containing 8A
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017860303.1 (30295..35970)

NW_017860303.1Genomic Context describing neighboring genes Neighboring gene kazal-type serine protease inhibitor domain-containing protein 1-like Neighboring gene UDP-galactose-4-epimerase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017860303.1 Unplaced Scaffold Reference Flounder_ref_guided_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 8A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paralichthys olivaceus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Flounder_ref_guided_V1.0 Primary Assembly

Genomic

  1. NW_017860303.1 Reference Flounder_ref_guided_V1.0 Primary Assembly

    Range
    30295..35970
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020107929.1 → XP_019963488.1  zinc finger and BTB domain-containing protein 8A isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:320 → 402
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:333 → 353
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:54 → 163
    BTB; BTB/POZ domain
    pfam13465
    Location:345 → 370
    zf-H2C2_2; Zinc-finger double domain

  2. XM_020107930.1 → XP_019963489.1  zinc finger and BTB domain-containing protein 8A isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:311 → 393
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:324 → 344
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:45 → 154
    BTB; BTB/POZ domain
    pfam13465
    Location:336 → 361
    zf-H2C2_2; Zinc-finger double domain

  3. XM_020107931.1 → XP_019963490.1  zinc finger and BTB domain-containing protein 8A isoform X3

    Conserved Domains (4) summary
    COG5048
    Location:304 → 386
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:317 → 337
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:38 → 147
    BTB; BTB/POZ domain
    pfam13465
    Location:329 → 354
    zf-H2C2_2; Zinc-finger double domain

  4. XM_020107932.1 → XP_019963491.1  zinc finger and BTB domain-containing protein 8A isoform X4

    Conserved Domains (4) summary
    COG5048
    Location:295 → 377
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:308 → 328
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:29 → 138
    BTB; BTB/POZ domain
    pfam13465
    Location:320 → 345
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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