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runx1 RUNX family transcription factor 1 [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109640042, updated on 14-Mar-2024

Summary

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Gene symbol
runx1
Gene description
RUNX family transcription factor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859715.1 (114685..138846)

NW_017859715.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene chloride intracellular channel protein 4-like Neighboring gene protein NLRC3-like Neighboring gene protein downstream neighbor of son homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017859715.1 Unplaced Scaffold Reference Flounder_ref_guided_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemopoiesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
runt-related transcription factor 1
Names
runt related transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paralichthys olivaceus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Flounder_ref_guided_V1.0 Primary Assembly

Genomic

  1. NW_017859715.1 Reference Flounder_ref_guided_V1.0 Primary Assembly

    Range
    114685..138846
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020103832.1 → XP_019959391.1  runt-related transcription factor 1 isoform X1

    Conserved Domains (2) summary
    pfam00853
    Location:70 → 191
    Runt; Runt domain
    pfam08504
    Location:391 → 486
    RunxI; Runx inhibition domain

  2. XM_020103833.1 → XP_019959392.1  runt-related transcription factor 1 isoform X2

    Conserved Domains (2) summary
    pfam00853
    Location:65 → 186
    Runt; Runt domain
    pfam08504
    Location:386 → 481
    RunxI; Runx inhibition domain
Nucleotide Protein
Heading Accession and Version

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