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cops8 COP9 signalosome subunit 8 [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109637404, updated on 14-Mar-2024

Summary

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Gene symbol
cops8
Gene description
COP9 signalosome subunit 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Orthologs
human zebrafish all
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Genomic context

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See cops8 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859675.1 (2462141..2473133, complement)

NW_017859675.1Genomic Context describing neighboring genes Neighboring gene collagen alpha-3(VI) chain-like Neighboring gene collagen, type VI, alpha 3 Neighboring gene inactive dipeptidyl peptidase 10-like Neighboring gene dipeptidyl peptidase like 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017859675.1 Unplaced Scaffold Reference Flounder_ref_guided_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in COP9 signalosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deneddylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COP9 signalosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
COP9 signalosome complex subunit 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paralichthys olivaceus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Flounder_ref_guided_V1.0 Primary Assembly

Genomic

  1. NW_017859675.1 Reference Flounder_ref_guided_V1.0 Primary Assembly

    Range
    2462141..2473133 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020099729.1 → XP_019955288.1  COP9 signalosome complex subunit 8 isoform X1

    Conserved Domains (1) summary
    pfam10075
    Location:69 → 188
    CSN8_PSD8_EIF3K; CSN8/PSMD8/EIF3K family

  2. XM_020099730.1 → XP_019955289.1  COP9 signalosome complex subunit 8 isoform X2

    Conserved Domains (4) summary
    pfam00643
    Location:264 → 306
    zf-B_box; B-box zinc finger
    cd16577
    Location:167 → 217
    RING-HC_MuRF_C-II; RING finger, HC subclass, found in muscle-specific RING finger proteins TRIM63/MuRF-1, TRIM55/MuRF-2 and TRIM54/MuRF-3
    cl24019
    Location:80 → 142
    CSN8_PSD8_EIF3K; CSN8/PSMD8/EIF3K family
    cl25407
    Location:313 → 438
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)
Nucleotide Protein
Heading Accession and Version

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