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ppm1ba protein phosphatase, Mg2+/Mn2+ dependent, 1Ba [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109636295, updated on 14-Mar-2024

Summary

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Gene symbol
ppm1ba
Gene description
protein phosphatase, Mg2+/Mn2+ dependent, 1Ba
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Also known as
ppm1b
Orthologs
human zebrafish all
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Genomic context

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See ppm1ba in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859642.1 (18372276..18386780)

NW_017859642.1Genomic Context describing neighboring genes Neighboring gene zinc finger, HIT-type containing 2 Neighboring gene uncharacterized LOC109632201 Neighboring gene solute carrier family 3 member 1 Neighboring gene prolyl endopeptidase like Neighboring gene calmodulin-lysine N-methyltransferase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017859642.1 Unplaced Scaffold Reference Flounder_ref_guided_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein phosphatase 1B
Names
protein phosphatase, Mg2+/Mn2+ dependent 1B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paralichthys olivaceus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Flounder_ref_guided_V1.0 Primary Assembly

Genomic

  1. NW_017859642.1 Reference Flounder_ref_guided_V1.0 Primary Assembly

    Range
    18372276..18386780
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020097922.1 → XP_019953481.1  protein phosphatase 1B

    Conserved Domains (2) summary
    cd00143
    Location:23 → 309
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
    pfam07830
    Location:303 → 380
    PP2C_C; Protein serine/threonine phosphatase 2C, C-terminal domain
Nucleotide Protein
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