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trpc4 transient receptor potential cation channel subfamily C member 4 [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109635706, updated on 9-Nov-2023

Summary

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Gene symbol
trpc4
Gene description
transient receptor potential cation channel subfamily C member 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859668.1 (3114730..3134275)

NW_017859668.1Genomic Context describing neighboring genes Neighboring gene FRAS1 related extracellular matrix 2a Neighboring gene ubiquitin-fold modifier 1 Neighboring gene periostin-like Neighboring gene UDP-glucuronosyltransferase 1-3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017859668.1 Unplaced Scaffold Reference Flounder_ref_guided_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inositol 1,4,5 trisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables store-operated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in manganese ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cation channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
short transient receptor potential channel 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paralichthys olivaceus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Flounder_ref_guided_V1.0 Primary Assembly

Genomic

  1. NW_017859668.1 Reference Flounder_ref_guided_V1.0 Primary Assembly

    Range
    3114730..3134275
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020097061.1 → XP_019952620.1  short transient receptor potential channel 4

    Conserved Domains (2) summary
    TIGR00870
    Location:66 → 804
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:119 → 147
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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